Hb_000204_030

Information

Type -
Description -
Location Contig204: 29247-31365
Sequence    

Annotation

kegg
ID rcu:RCOM_1077370
description hypothetical protein
nr
ID XP_012067299.1
description PREDICTED: TMV resistance protein N-like [Jatropha curcas]
swissprot
ID Q9SCX6
description Disease resistance protein RPS4 OS=Arabidopsis thaliana GN=RPS4 PE=1 SV=1
trembl
ID B9RM27
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1077370 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000204_030 0.0 - - PREDICTED: TMV resistance protein N-like [Jatropha curcas]
2 Hb_001104_200 0.0766790945 - - Phytosulfokine 3 precursor, putative [Theobroma cacao]
3 Hb_029510_110 0.1044884926 - - PREDICTED: protein PLANT CADMIUM RESISTANCE 8-like [Jatropha curcas]
4 Hb_002046_100 0.1062052748 transcription factor TF Family: MYB PREDICTED: transcription factor MYB82 [Jatropha curcas]
5 Hb_000563_610 0.1151619948 - - PREDICTED: putative E3 ubiquitin-protein ligase LIN-1 [Jatropha curcas]
6 Hb_004445_090 0.1187639255 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003428_100 0.1287653524 - - Polygalacturonase precursor, putative [Ricinus communis]
8 Hb_001268_330 0.1329015304 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
9 Hb_000245_140 0.1356748125 - - PREDICTED: CASP-like protein 3A1 [Jatropha curcas]
10 Hb_000648_120 0.1384442894 - - PREDICTED: L-type lectin-domain containing receptor kinase IV.1 [Vitis vinifera]
11 Hb_000934_170 0.143687479 - - alcohol dehydrogenase, putative [Ricinus communis]
12 Hb_173448_010 0.1467424447 - - PREDICTED: galactose oxidase-like [Jatropha curcas]
13 Hb_000230_230 0.1520275103 - - hydrolase, putative [Ricinus communis]
14 Hb_012796_050 0.1530266626 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase 1-deoxyxylulose-5-phosphate synthase, putative [Ricinus communis]
15 Hb_000739_130 0.1531110729 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001366_250 0.1542199139 - - PREDICTED: mannan endo-1,4-beta-mannosidase 4-like [Jatropha curcas]
17 Hb_061195_010 0.1553568098 - - Galactose oxidase precursor, putative [Ricinus communis]
18 Hb_002232_370 0.1573945246 - - PREDICTED: receptor-like protein kinase HAIKU2 [Jatropha curcas]
19 Hb_000438_190 0.1593744333 - - PREDICTED: peroxidase 4-like [Jatropha curcas]
20 Hb_148914_010 0.159458796 - - glutathione s-transferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000204_030 Hb_000204_030 Hb_001104_200 Hb_001104_200 Hb_000204_030--Hb_001104_200 Hb_029510_110 Hb_029510_110 Hb_000204_030--Hb_029510_110 Hb_002046_100 Hb_002046_100 Hb_000204_030--Hb_002046_100 Hb_000563_610 Hb_000563_610 Hb_000204_030--Hb_000563_610 Hb_004445_090 Hb_004445_090 Hb_000204_030--Hb_004445_090 Hb_003428_100 Hb_003428_100 Hb_000204_030--Hb_003428_100 Hb_001104_200--Hb_029510_110 Hb_000230_230 Hb_000230_230 Hb_001104_200--Hb_000230_230 Hb_000934_170 Hb_000934_170 Hb_001104_200--Hb_000934_170 Hb_001104_200--Hb_000563_610 Hb_000580_070 Hb_000580_070 Hb_001104_200--Hb_000580_070 Hb_061195_010 Hb_061195_010 Hb_029510_110--Hb_061195_010 Hb_029510_110--Hb_000563_610 Hb_001366_250 Hb_001366_250 Hb_029510_110--Hb_001366_250 Hb_012239_080 Hb_012239_080 Hb_029510_110--Hb_012239_080 Hb_000245_140 Hb_000245_140 Hb_002046_100--Hb_000245_140 Hb_002046_100--Hb_000563_610 Hb_002046_100--Hb_004445_090 Hb_001168_010 Hb_001168_010 Hb_002046_100--Hb_001168_010 Hb_000648_120 Hb_000648_120 Hb_002046_100--Hb_000648_120 Hb_004055_180 Hb_004055_180 Hb_000563_610--Hb_004055_180 Hb_000739_130 Hb_000739_130 Hb_000563_610--Hb_000739_130 Hb_000563_610--Hb_000245_140 Hb_097908_010 Hb_097908_010 Hb_000563_610--Hb_097908_010 Hb_012796_050 Hb_012796_050 Hb_000563_610--Hb_012796_050 Hb_004774_060 Hb_004774_060 Hb_000563_610--Hb_004774_060 Hb_004445_090--Hb_000245_140 Hb_004445_090--Hb_000563_610 Hb_002232_370 Hb_002232_370 Hb_004445_090--Hb_002232_370 Hb_004445_090--Hb_000739_130 Hb_000438_190 Hb_000438_190 Hb_004445_090--Hb_000438_190 Hb_003428_100--Hb_029510_110 Hb_003428_100--Hb_001104_200 Hb_003428_100--Hb_002046_100 Hb_002325_020 Hb_002325_020 Hb_003428_100--Hb_002325_020 Hb_004143_120 Hb_004143_120 Hb_003428_100--Hb_004143_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.177693 0.588552 0.476509 0.689527 0.0665276 0.0741593
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0443737 0.122202 0.0662366 7.45818 0.369103

CAGE analysis