Hb_000580_070

Information

Type -
Description -
Location Contig580: 35220-38833
Sequence    

Annotation

kegg
ID pop:POPTR_0002s14800g
description POPTRDRAFT_644329; hypothetical protein
nr
ID XP_012083586.1
description PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]
swissprot
ID Q9LYN8
description Leucine-rich repeat receptor protein kinase EMS1 OS=Arabidopsis thaliana GN=EMS1 PE=1 SV=1
trembl
ID A0A067K171
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14534 PE=4 SV=1
Gene Ontology
ID GO:0016021
description leucine rich repeat receptor

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49830: 37567-38680
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000580_070 0.0 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]
2 Hb_000032_560 0.0820116318 - - hypothetical protein JCGZ_15037 [Jatropha curcas]
3 Hb_018133_110 0.1081402436 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
4 Hb_002749_070 0.1131829416 - - PREDICTED: uncharacterized protein LOC105635941 [Jatropha curcas]
5 Hb_000487_240 0.1156603301 - - PREDICTED: CYSTM1 family protein B [Cucumis melo]
6 Hb_000025_740 0.1159961391 - - PREDICTED: protein TRANSPARENT TESTA 12 isoform X1 [Jatropha curcas]
7 Hb_032050_050 0.1189260657 - - PREDICTED: peroxidase 12-like [Jatropha curcas]
8 Hb_003090_180 0.1190085172 - - PREDICTED: uncharacterized protein LOC105646674 [Jatropha curcas]
9 Hb_000276_030 0.1227950221 - - dimethylaniline monooxygenase, putative [Ricinus communis]
10 Hb_001104_210 0.1271398103 - - hypothetical protein JCGZ_23620 [Jatropha curcas]
11 Hb_002182_050 0.1281589249 - - hypothetical protein CICLE_v10022654mg [Citrus clementina]
12 Hb_004544_070 0.1326761778 - - unnamed protein product [Vitis vinifera]
13 Hb_001377_010 0.1347341412 - - PREDICTED: transcription factor TRY-like [Jatropha curcas]
14 Hb_000003_510 0.1353283804 - - PREDICTED: uncharacterized protein LOC105631555 [Jatropha curcas]
15 Hb_001758_120 0.1382946962 - - unnamed protein product [Vitis vinifera]
16 Hb_002016_020 0.1392775786 - - RALFL33, putative [Ricinus communis]
17 Hb_001104_200 0.1399393351 - - Phytosulfokine 3 precursor, putative [Theobroma cacao]
18 Hb_000934_170 0.1408793698 - - alcohol dehydrogenase, putative [Ricinus communis]
19 Hb_003734_120 0.1415467078 - - PREDICTED: uncharacterized protein LOC105632812 isoform X1 [Jatropha curcas]
20 Hb_000230_230 0.1424632103 - - hydrolase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000580_070 Hb_000580_070 Hb_000032_560 Hb_000032_560 Hb_000580_070--Hb_000032_560 Hb_018133_110 Hb_018133_110 Hb_000580_070--Hb_018133_110 Hb_002749_070 Hb_002749_070 Hb_000580_070--Hb_002749_070 Hb_000487_240 Hb_000487_240 Hb_000580_070--Hb_000487_240 Hb_000025_740 Hb_000025_740 Hb_000580_070--Hb_000025_740 Hb_032050_050 Hb_032050_050 Hb_000580_070--Hb_032050_050 Hb_000032_560--Hb_018133_110 Hb_118707_020 Hb_118707_020 Hb_000032_560--Hb_118707_020 Hb_002597_010 Hb_002597_010 Hb_000032_560--Hb_002597_010 Hb_135811_040 Hb_135811_040 Hb_000032_560--Hb_135811_040 Hb_000276_030 Hb_000276_030 Hb_000032_560--Hb_000276_030 Hb_000347_230 Hb_000347_230 Hb_018133_110--Hb_000347_230 Hb_002042_200 Hb_002042_200 Hb_018133_110--Hb_002042_200 Hb_002301_420 Hb_002301_420 Hb_018133_110--Hb_002301_420 Hb_003734_120 Hb_003734_120 Hb_018133_110--Hb_003734_120 Hb_004544_070 Hb_004544_070 Hb_002749_070--Hb_004544_070 Hb_164283_010 Hb_164283_010 Hb_002749_070--Hb_164283_010 Hb_011145_020 Hb_011145_020 Hb_002749_070--Hb_011145_020 Hb_002749_070--Hb_000025_740 Hb_018591_010 Hb_018591_010 Hb_002749_070--Hb_018591_010 Hb_000438_190 Hb_000438_190 Hb_002749_070--Hb_000438_190 Hb_000487_240--Hb_000276_030 Hb_003090_180 Hb_003090_180 Hb_000487_240--Hb_003090_180 Hb_001104_210 Hb_001104_210 Hb_000487_240--Hb_001104_210 Hb_002182_050 Hb_002182_050 Hb_000487_240--Hb_002182_050 Hb_000487_240--Hb_000025_740 Hb_012807_140 Hb_012807_140 Hb_000487_240--Hb_012807_140 Hb_010334_040 Hb_010334_040 Hb_000025_740--Hb_010334_040 Hb_000005_350 Hb_000005_350 Hb_000025_740--Hb_000005_350 Hb_000025_740--Hb_001104_210 Hb_000025_740--Hb_004544_070 Hb_000025_740--Hb_164283_010 Hb_000984_080 Hb_000984_080 Hb_032050_050--Hb_000984_080 Hb_002110_270 Hb_002110_270 Hb_032050_050--Hb_002110_270 Hb_002150_010 Hb_002150_010 Hb_032050_050--Hb_002150_010 Hb_002900_070 Hb_002900_070 Hb_032050_050--Hb_002900_070 Hb_006006_070 Hb_006006_070 Hb_032050_050--Hb_006006_070 Hb_076895_020 Hb_076895_020 Hb_032050_050--Hb_076895_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.304449 2.86422 1.73091 4.77154 0.0683732 0.188998
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.196572 0.0843706 0.0268011 19.1266 1.49414

CAGE analysis