Hb_018133_110

Information

Type -
Description -
Location Contig18133: 87210-90695
Sequence    

Annotation

kegg
ID rcu:RCOM_1510300
description BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative (EC:2.7.11.30)
nr
ID XP_002511372.1
description BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
swissprot
ID Q9LMB9
description Cysteine-rich receptor-like protein kinase 1 OS=Arabidopsis thaliana GN=CRK1 PE=2 SV=2
trembl
ID B9RAZ7
description BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1, putative OS=Ricinus communis GN=RCOM_1510300 PE=4 SV=1
Gene Ontology
ID GO:0004672
description cysteine-rich receptor-like protein kinase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17632: 87846-87968 , PASA_asmbl_17634: 90028-90222
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_018133_110 0.0 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
2 Hb_000032_560 0.072754146 - - hypothetical protein JCGZ_15037 [Jatropha curcas]
3 Hb_000347_230 0.0961685454 - - inter-alpha-trypsin inhibitor heavy chain, putative [Ricinus communis]
4 Hb_002042_200 0.0965818234 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
5 Hb_000580_070 0.1081402436 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]
6 Hb_002301_420 0.1088631053 transcription factor TF Family: bHLH hypothetical protein POPTR_0011s05320g [Populus trichocarpa]
7 Hb_003734_120 0.1105814247 - - PREDICTED: uncharacterized protein LOC105632812 isoform X1 [Jatropha curcas]
8 Hb_002182_050 0.1127615209 - - hypothetical protein CICLE_v10022654mg [Citrus clementina]
9 Hb_118707_020 0.1167683086 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000380_210 0.1221936832 - - Cyclic nucleotide-gated channel 15 [Theobroma cacao]
11 Hb_000276_030 0.1244617544 - - dimethylaniline monooxygenase, putative [Ricinus communis]
12 Hb_001623_400 0.1268047812 - - conserved hypothetical protein [Ricinus communis]
13 Hb_006637_040 0.127576742 - - phenylalanine ammonia-lyase 2 [Manihot esculenta]
14 Hb_002749_070 0.1276386581 - - PREDICTED: uncharacterized protein LOC105635941 [Jatropha curcas]
15 Hb_025254_020 0.129497893 - - PREDICTED: formate dehydrogenase, mitochondrial [Vitis vinifera]
16 Hb_002597_010 0.1302611816 - - PREDICTED: putative disease resistance protein RGA1 [Malus domestica]
17 Hb_000487_240 0.1315662913 - - PREDICTED: CYSTM1 family protein B [Cucumis melo]
18 Hb_001959_030 0.132846713 - - conserved hypothetical protein [Ricinus communis]
19 Hb_004544_070 0.1347595186 - - unnamed protein product [Vitis vinifera]
20 Hb_188923_010 0.1357785283 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]

Gene co-expression network

sample Hb_018133_110 Hb_018133_110 Hb_000032_560 Hb_000032_560 Hb_018133_110--Hb_000032_560 Hb_000347_230 Hb_000347_230 Hb_018133_110--Hb_000347_230 Hb_002042_200 Hb_002042_200 Hb_018133_110--Hb_002042_200 Hb_000580_070 Hb_000580_070 Hb_018133_110--Hb_000580_070 Hb_002301_420 Hb_002301_420 Hb_018133_110--Hb_002301_420 Hb_003734_120 Hb_003734_120 Hb_018133_110--Hb_003734_120 Hb_000032_560--Hb_000580_070 Hb_118707_020 Hb_118707_020 Hb_000032_560--Hb_118707_020 Hb_002597_010 Hb_002597_010 Hb_000032_560--Hb_002597_010 Hb_135811_040 Hb_135811_040 Hb_000032_560--Hb_135811_040 Hb_000276_030 Hb_000276_030 Hb_000032_560--Hb_000276_030 Hb_006618_080 Hb_006618_080 Hb_000347_230--Hb_006618_080 Hb_001623_400 Hb_001623_400 Hb_000347_230--Hb_001623_400 Hb_000347_230--Hb_000032_560 Hb_098030_010 Hb_098030_010 Hb_000347_230--Hb_098030_010 Hb_000347_230--Hb_003734_120 Hb_002042_200--Hb_001623_400 Hb_000175_480 Hb_000175_480 Hb_002042_200--Hb_000175_480 Hb_027634_010 Hb_027634_010 Hb_002042_200--Hb_027634_010 Hb_017491_040 Hb_017491_040 Hb_002042_200--Hb_017491_040 Hb_001959_030 Hb_001959_030 Hb_002042_200--Hb_001959_030 Hb_002749_070 Hb_002749_070 Hb_000580_070--Hb_002749_070 Hb_000487_240 Hb_000487_240 Hb_000580_070--Hb_000487_240 Hb_000025_740 Hb_000025_740 Hb_000580_070--Hb_000025_740 Hb_032050_050 Hb_032050_050 Hb_000580_070--Hb_032050_050 Hb_018591_010 Hb_018591_010 Hb_002301_420--Hb_018591_010 Hb_164283_010 Hb_164283_010 Hb_002301_420--Hb_164283_010 Hb_012368_080 Hb_012368_080 Hb_002301_420--Hb_012368_080 Hb_000540_030 Hb_000540_030 Hb_002301_420--Hb_000540_030 Hb_006637_040 Hb_006637_040 Hb_002301_420--Hb_006637_040 Hb_003734_120--Hb_000276_030 Hb_003787_060 Hb_003787_060 Hb_003734_120--Hb_003787_060 Hb_188923_010 Hb_188923_010 Hb_003734_120--Hb_188923_010 Hb_007313_010 Hb_007313_010 Hb_003734_120--Hb_007313_010 Hb_003734_120--Hb_002042_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0492365 0.694835 0.403793 1.6814 0.00680939 0.00594362
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0154305 0.0242849 0.0232043 4.76472 0.155272

CAGE analysis