Hb_012368_080

Information

Type -
Description -
Location Contig12368: 31625-78644
Sequence    

Annotation

kegg
ID cam:101506026
description uncharacterized LOC101506026
nr
ID XP_011025398.1
description PREDICTED: uncharacterized protein LOC105126277 [Populus euphratica]
swissprot
ID Q42517
description Peroxidase N OS=Armoracia rusticana GN=HRPN PE=2 SV=1
trembl
ID A0A0D9X2X2
description Uncharacterized protein OS=Leersia perrieri PE=4 SV=1
Gene Ontology
ID GO:0005576
description peroxidase n

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07217: 31444-33128 , PASA_asmbl_07218: 64758-66576
cDNA
(Sanger)
(ID:Location)		 003_P01.ab1: 31874-33128 , 017_A23.ab1: 31945-33118 , 017_I17.ab1: 31967-33128 , 019_J03.ab1: 31897-33128 , 019_K02.ab1: 31933-33128 , 029_M14.ab1: 65416-66576 , 033_G13.ab1: 31942-33128 , 042_A03.ab1: 31975-33128

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012368_080 0.0 - - PREDICTED: uncharacterized protein LOC105126277 [Populus euphratica]
2 Hb_003893_100 0.0786338686 - - PREDICTED: uncharacterized protein LOC105648774 [Jatropha curcas]
3 Hb_000297_180 0.0899960897 - - Desacetoxyvindoline 4-hydroxylase, putative [Ricinus communis]
4 Hb_006637_040 0.0904120369 - - phenylalanine ammonia-lyase 2 [Manihot esculenta]
5 Hb_018591_010 0.0919287809 - - kinase, putative [Ricinus communis]
6 Hb_098030_010 0.09575815 - - hypothetical protein JCGZ_06251 [Jatropha curcas]
7 Hb_002301_420 0.10693677 transcription factor TF Family: bHLH hypothetical protein POPTR_0011s05320g [Populus trichocarpa]
8 Hb_008418_010 0.1101579218 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH93-like [Jatropha curcas]
9 Hb_000797_030 0.1112793084 - - PREDICTED: leucoanthocyanidin dioxygenase [Jatropha curcas]
10 Hb_164283_010 0.1142566623 - - hypothetical protein RCOM_0725500 [Ricinus communis]
11 Hb_003097_200 0.1142579228 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001758_120 0.119442468 - - unnamed protein product [Vitis vinifera]
13 Hb_004316_130 0.126539952 - - PREDICTED: glutathione transferase GST 23-like, partial [Eucalyptus grandis]
14 Hb_162557_010 0.1294333021 - - PREDICTED: uncharacterized protein LOC105634192 [Jatropha curcas]
15 Hb_002809_020 0.1295519765 - - PREDICTED: leucoanthocyanidin dioxygenase [Jatropha curcas]
16 Hb_002475_070 0.1307301319 - - hypothetical protein POPTR_0017s02440g, partial [Populus trichocarpa]
17 Hb_000540_030 0.1318737082 - - Chitinase 1 precursor, putative [Ricinus communis]
18 Hb_005144_180 0.1319497964 - - PREDICTED: protein enabled homolog [Populus euphratica]
19 Hb_000347_530 0.1346299627 transcription factor TF Family: MYB PREDICTED: transcription factor MYB114-like [Jatropha curcas]
20 Hb_000934_170 0.1386416767 - - alcohol dehydrogenase, putative [Ricinus communis]

Gene co-expression network

sample Hb_012368_080 Hb_012368_080 Hb_003893_100 Hb_003893_100 Hb_012368_080--Hb_003893_100 Hb_000297_180 Hb_000297_180 Hb_012368_080--Hb_000297_180 Hb_006637_040 Hb_006637_040 Hb_012368_080--Hb_006637_040 Hb_018591_010 Hb_018591_010 Hb_012368_080--Hb_018591_010 Hb_098030_010 Hb_098030_010 Hb_012368_080--Hb_098030_010 Hb_002301_420 Hb_002301_420 Hb_012368_080--Hb_002301_420 Hb_000797_030 Hb_000797_030 Hb_003893_100--Hb_000797_030 Hb_003097_200 Hb_003097_200 Hb_003893_100--Hb_003097_200 Hb_004316_130 Hb_004316_130 Hb_003893_100--Hb_004316_130 Hb_003893_100--Hb_000297_180 Hb_003893_100--Hb_006637_040 Hb_000297_180--Hb_004316_130 Hb_144783_010 Hb_144783_010 Hb_000297_180--Hb_144783_010 Hb_035583_010 Hb_035583_010 Hb_000297_180--Hb_035583_010 Hb_002475_070 Hb_002475_070 Hb_000297_180--Hb_002475_070 Hb_164283_010 Hb_164283_010 Hb_006637_040--Hb_164283_010 Hb_006637_040--Hb_018591_010 Hb_008418_010 Hb_008418_010 Hb_006637_040--Hb_008418_010 Hb_001758_120 Hb_001758_120 Hb_006637_040--Hb_001758_120 Hb_006637_040--Hb_000797_030 Hb_018591_010--Hb_164283_010 Hb_018591_010--Hb_008418_010 Hb_004544_070 Hb_004544_070 Hb_018591_010--Hb_004544_070 Hb_002749_070 Hb_002749_070 Hb_018591_010--Hb_002749_070 Hb_011145_020 Hb_011145_020 Hb_018591_010--Hb_011145_020 Hb_002809_020 Hb_002809_020 Hb_098030_010--Hb_002809_020 Hb_098030_010--Hb_008418_010 Hb_098030_010--Hb_006637_040 Hb_098030_010--Hb_018591_010 Hb_003768_100 Hb_003768_100 Hb_098030_010--Hb_003768_100 Hb_002301_420--Hb_018591_010 Hb_002301_420--Hb_164283_010 Hb_000540_030 Hb_000540_030 Hb_002301_420--Hb_000540_030 Hb_002301_420--Hb_006637_040 Hb_018133_110 Hb_018133_110 Hb_002301_420--Hb_018133_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0355616 1.99598 7.59764 27.5424 0.0190591 0.0148938
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.190019 0.0498497 0.173183 80.973 2.84615

CAGE analysis