Hb_006637_040

Information

Type -
Description -
Location Contig6637: 23991-27715
Sequence    

Annotation

kegg
ID rcu:RCOM_1355480
description Phenylalanine ammonia-lyase, putative (EC:4.3.1.24)
nr
ID AAK60275.1
description phenylalanine ammonia-lyase 2 [Manihot esculenta]
swissprot
ID P45730
description Phenylalanine ammonia-lyase OS=Populus trichocarpa GN=PAL PE=2 SV=1
trembl
ID Q94F89
description Phenylalanine ammonia-lyase OS=Manihot esculenta GN=PAL2 PE=3 SV=1
Gene Ontology
ID GO:0005737
description phenylalanine ammonia-lyase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006637_040 0.0 - - phenylalanine ammonia-lyase 2 [Manihot esculenta]
2 Hb_164283_010 0.0663598314 - - hypothetical protein RCOM_0725500 [Ricinus communis]
3 Hb_018591_010 0.0685644622 - - kinase, putative [Ricinus communis]
4 Hb_008418_010 0.0787256454 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH93-like [Jatropha curcas]
5 Hb_001758_120 0.0872187937 - - unnamed protein product [Vitis vinifera]
6 Hb_000797_030 0.0903548285 - - PREDICTED: leucoanthocyanidin dioxygenase [Jatropha curcas]
7 Hb_012368_080 0.0904120369 - - PREDICTED: uncharacterized protein LOC105126277 [Populus euphratica]
8 Hb_004544_070 0.0908006522 - - unnamed protein product [Vitis vinifera]
9 Hb_003893_100 0.0911993841 - - PREDICTED: uncharacterized protein LOC105648774 [Jatropha curcas]
10 Hb_002749_070 0.0955237775 - - PREDICTED: uncharacterized protein LOC105635941 [Jatropha curcas]
11 Hb_003097_200 0.0997396271 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002301_420 0.1081684828 transcription factor TF Family: bHLH hypothetical protein POPTR_0011s05320g [Populus trichocarpa]
13 Hb_000911_050 0.1119241216 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 21 [Jatropha curcas]
14 Hb_000934_170 0.1145294519 - - alcohol dehydrogenase, putative [Ricinus communis]
15 Hb_098030_010 0.1147764554 - - hypothetical protein JCGZ_06251 [Jatropha curcas]
16 Hb_011145_020 0.1193727534 - - PREDICTED: metalloendoproteinase 1-like [Pyrus x bretschneideri]
17 Hb_118707_020 0.120842583 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000032_560 0.1254500524 - - hypothetical protein JCGZ_15037 [Jatropha curcas]
19 Hb_001922_010 0.1261641041 - - PREDICTED: ABC transporter G family member 8 [Jatropha curcas]
20 Hb_018133_110 0.127576742 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_006637_040 Hb_006637_040 Hb_164283_010 Hb_164283_010 Hb_006637_040--Hb_164283_010 Hb_018591_010 Hb_018591_010 Hb_006637_040--Hb_018591_010 Hb_008418_010 Hb_008418_010 Hb_006637_040--Hb_008418_010 Hb_001758_120 Hb_001758_120 Hb_006637_040--Hb_001758_120 Hb_000797_030 Hb_000797_030 Hb_006637_040--Hb_000797_030 Hb_012368_080 Hb_012368_080 Hb_006637_040--Hb_012368_080 Hb_164283_010--Hb_018591_010 Hb_164283_010--Hb_008418_010 Hb_004544_070 Hb_004544_070 Hb_164283_010--Hb_004544_070 Hb_002749_070 Hb_002749_070 Hb_164283_010--Hb_002749_070 Hb_011145_020 Hb_011145_020 Hb_164283_010--Hb_011145_020 Hb_018591_010--Hb_008418_010 Hb_018591_010--Hb_004544_070 Hb_018591_010--Hb_002749_070 Hb_018591_010--Hb_011145_020 Hb_000723_240 Hb_000723_240 Hb_008418_010--Hb_000723_240 Hb_001922_010 Hb_001922_010 Hb_008418_010--Hb_001922_010 Hb_003768_100 Hb_003768_100 Hb_008418_010--Hb_003768_100 Hb_003893_100 Hb_003893_100 Hb_001758_120--Hb_003893_100 Hb_001758_120--Hb_000797_030 Hb_001758_120--Hb_002749_070 Hb_003097_200 Hb_003097_200 Hb_001758_120--Hb_003097_200 Hb_001758_120--Hb_164283_010 Hb_000797_030--Hb_003097_200 Hb_000797_030--Hb_003893_100 Hb_000911_050 Hb_000911_050 Hb_000797_030--Hb_000911_050 Hb_004316_130 Hb_004316_130 Hb_000797_030--Hb_004316_130 Hb_012368_080--Hb_003893_100 Hb_000297_180 Hb_000297_180 Hb_012368_080--Hb_000297_180 Hb_012368_080--Hb_018591_010 Hb_098030_010 Hb_098030_010 Hb_012368_080--Hb_098030_010 Hb_002301_420 Hb_002301_420 Hb_012368_080--Hb_002301_420
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0450352 4.76504 7.5032 23.9881 0.460534 0.0140757
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0340647 0.0268053 0.0511362 77.7552 4.9323

CAGE analysis