Hb_001922_010

Information

Type -
Description -
Location Contig1922: 9660-11480
Sequence    

Annotation

kegg
ID pop:POPTR_0015s05680g
description ABC transporter family protein
nr
ID XP_012090161.1
description PREDICTED: ABC transporter G family member 8 [Jatropha curcas]
swissprot
ID Q9FLX5
description ABC transporter G family member 8 OS=Arabidopsis thaliana GN=ABCG8 PE=2 SV=1
trembl
ID A0A067JRT0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26035 PE=3 SV=1
Gene Ontology
ID GO:0016020
description abc transporter g family member 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19155: 9497-11513
cDNA
(Sanger)
(ID:Location)		 006_A17.ab1: 10417-11192 , 027_J09.ab1: 10405-11192 , 034_C05.ab1: 10365-11192

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001922_010 0.0 - - PREDICTED: ABC transporter G family member 8 [Jatropha curcas]
2 Hb_001545_270 0.0623719331 - - laccase, putative [Ricinus communis]
3 Hb_008418_010 0.0890773315 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH93-like [Jatropha curcas]
4 Hb_000723_240 0.0936125191 - - phenylalanine ammonia-lyase 2 [Manihot esculenta]
5 Hb_032631_080 0.0960635504 - - PREDICTED: L-Ala-D/L-amino acid epimerase-like isoform X2 [Jatropha curcas]
6 Hb_001691_060 0.1015041206 - - lipoxygenase, putative [Ricinus communis]
7 Hb_011145_020 0.1021534425 - - PREDICTED: metalloendoproteinase 1-like [Pyrus x bretschneideri]
8 Hb_164283_010 0.1065974742 - - hypothetical protein RCOM_0725500 [Ricinus communis]
9 Hb_000589_100 0.1126414884 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
10 Hb_000075_030 0.113527171 - - PREDICTED: aldo-keto reductase family 4 member C10-like [Fragaria vesca subsp. vesca]
11 Hb_109673_010 0.1154281636 - - glutathione s-transferase, putative [Ricinus communis]
12 Hb_002749_070 0.1199242576 - - PREDICTED: uncharacterized protein LOC105635941 [Jatropha curcas]
13 Hb_000005_350 0.1205016132 - - PREDICTED: uncharacterized protein LOC105634263 [Jatropha curcas]
14 Hb_000025_740 0.122636257 - - PREDICTED: protein TRANSPARENT TESTA 12 isoform X1 [Jatropha curcas]
15 Hb_018591_010 0.1253404396 - - kinase, putative [Ricinus communis]
16 Hb_003160_050 0.1255920527 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
17 Hb_028927_010 0.1258946038 - - leucine-rich repeat protein, putative [Ricinus communis]
18 Hb_006637_040 0.1261641041 - - phenylalanine ammonia-lyase 2 [Manihot esculenta]
19 Hb_007017_120 0.1274538461 - - PREDICTED: exocyst complex component EXO84A [Jatropha curcas]
20 Hb_010334_040 0.1280056839 - - PREDICTED: uncharacterized protein LOC105108579 [Populus euphratica]

Gene co-expression network

sample Hb_001922_010 Hb_001922_010 Hb_001545_270 Hb_001545_270 Hb_001922_010--Hb_001545_270 Hb_008418_010 Hb_008418_010 Hb_001922_010--Hb_008418_010 Hb_000723_240 Hb_000723_240 Hb_001922_010--Hb_000723_240 Hb_032631_080 Hb_032631_080 Hb_001922_010--Hb_032631_080 Hb_001691_060 Hb_001691_060 Hb_001922_010--Hb_001691_060 Hb_011145_020 Hb_011145_020 Hb_001922_010--Hb_011145_020 Hb_109673_010 Hb_109673_010 Hb_001545_270--Hb_109673_010 Hb_001218_070 Hb_001218_070 Hb_001545_270--Hb_001218_070 Hb_000911_050 Hb_000911_050 Hb_001545_270--Hb_000911_050 Hb_001545_270--Hb_000723_240 Hb_001545_270--Hb_008418_010 Hb_164283_010 Hb_164283_010 Hb_008418_010--Hb_164283_010 Hb_018591_010 Hb_018591_010 Hb_008418_010--Hb_018591_010 Hb_006637_040 Hb_006637_040 Hb_008418_010--Hb_006637_040 Hb_008418_010--Hb_000723_240 Hb_003768_100 Hb_003768_100 Hb_008418_010--Hb_003768_100 Hb_003160_050 Hb_003160_050 Hb_000723_240--Hb_003160_050 Hb_000834_210 Hb_000834_210 Hb_000723_240--Hb_000834_210 Hb_007313_010 Hb_007313_010 Hb_000723_240--Hb_007313_010 Hb_000589_100 Hb_000589_100 Hb_000723_240--Hb_000589_100 Hb_001005_210 Hb_001005_210 Hb_032631_080--Hb_001005_210 Hb_000075_030 Hb_000075_030 Hb_032631_080--Hb_000075_030 Hb_032631_080--Hb_001691_060 Hb_032631_080--Hb_109673_010 Hb_004881_080 Hb_004881_080 Hb_032631_080--Hb_004881_080 Hb_001691_060--Hb_011145_020 Hb_000005_350 Hb_000005_350 Hb_001691_060--Hb_000005_350 Hb_001691_060--Hb_000075_030 Hb_000917_330 Hb_000917_330 Hb_001691_060--Hb_000917_330 Hb_001691_060--Hb_000589_100 Hb_033363_080 Hb_033363_080 Hb_011145_020--Hb_033363_080 Hb_011145_020--Hb_164283_010 Hb_002749_070 Hb_002749_070 Hb_011145_020--Hb_002749_070 Hb_004544_070 Hb_004544_070 Hb_011145_020--Hb_004544_070 Hb_011145_020--Hb_018591_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.137518 3.2485 10.6015 13.5632 0.0412603 0.031087
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 61.1087 8.05903

CAGE analysis