Hb_004881_080

Information

Type -
Description -
Location Contig4881: 83525-85379
Sequence    

Annotation

kegg
ID pop:POPTR_0005s22390g
description POPTRDRAFT_559475; phospholipid/glycerol acyltransferase family protein
nr
ID XP_011044793.1
description PREDICTED: glycerol-3-phosphate acyltransferase 1 [Populus euphratica]
swissprot
ID Q9SHJ5
description Glycerol-3-phosphate acyltransferase 1 OS=Arabidopsis thaliana GN=GPAT1 PE=1 SV=1
trembl
ID B9H815
description Phospholipid/glycerol acyltransferase family protein OS=Populus trichocarpa GN=POPTR_0005s22390g PE=4 SV=2
Gene Ontology
ID GO:0004366
description glycerol-3-phosphate acyltransferase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45118: 83885-84002
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004881_080 0.0 - - PREDICTED: glycerol-3-phosphate acyltransferase 1 [Populus euphratica]
2 Hb_002218_040 0.0641864261 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000061_360 0.0735582916 - - Brassinosteroid LRR receptor kinase precursor, putative [Ricinus communis]
4 Hb_000567_300 0.0960762738 - - PREDICTED: protein YLS9-like [Jatropha curcas]
5 Hb_003189_020 0.1061792511 - - PREDICTED: probable glutathione S-transferase [Jatropha curcas]
6 Hb_032631_080 0.1123481854 - - PREDICTED: L-Ala-D/L-amino acid epimerase-like isoform X2 [Jatropha curcas]
7 Hb_005550_040 0.127072117 - - PREDICTED: epoxide hydrolase 4-like [Jatropha curcas]
8 Hb_000075_030 0.1278002217 - - PREDICTED: aldo-keto reductase family 4 member C10-like [Fragaria vesca subsp. vesca]
9 Hb_001005_210 0.1318026179 - - PREDICTED: chalcone synthase 3 [Jatropha curcas]
10 Hb_109673_010 0.1360084058 - - glutathione s-transferase, putative [Ricinus communis]
11 Hb_006573_250 0.1364358556 - - PREDICTED: ABC transporter G family member 8 [Jatropha curcas]
12 Hb_178703_010 0.1394150963 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
13 Hb_002248_020 0.1454230403 transcription factor TF Family: NAC PREDICTED: transcription factor JUNGBRUNNEN 1-like isoform X1 [Populus euphratica]
14 Hb_001922_010 0.1606995935 - - PREDICTED: ABC transporter G family member 8 [Jatropha curcas]
15 Hb_032223_020 0.1610020451 - - ATP binding protein, putative [Ricinus communis]
16 Hb_001279_220 0.1620401395 - - protein binding protein, putative [Ricinus communis]
17 Hb_001004_130 0.1622426736 - - PREDICTED: chalcone synthase 3 [Jatropha curcas]
18 Hb_000484_040 0.1624590754 - - PREDICTED: zeaxanthin epoxidase, chloroplastic-like [Jatropha curcas]
19 Hb_007101_210 0.1624717167 - - UDP-glucosyltransferase, putative [Ricinus communis]
20 Hb_046770_010 0.1641484751 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_004881_080 Hb_004881_080 Hb_002218_040 Hb_002218_040 Hb_004881_080--Hb_002218_040 Hb_000061_360 Hb_000061_360 Hb_004881_080--Hb_000061_360 Hb_000567_300 Hb_000567_300 Hb_004881_080--Hb_000567_300 Hb_003189_020 Hb_003189_020 Hb_004881_080--Hb_003189_020 Hb_032631_080 Hb_032631_080 Hb_004881_080--Hb_032631_080 Hb_005550_040 Hb_005550_040 Hb_004881_080--Hb_005550_040 Hb_000075_030 Hb_000075_030 Hb_002218_040--Hb_000075_030 Hb_002248_020 Hb_002248_020 Hb_002218_040--Hb_002248_020 Hb_001005_210 Hb_001005_210 Hb_002218_040--Hb_001005_210 Hb_002218_040--Hb_032631_080 Hb_002218_040--Hb_000061_360 Hb_000061_360--Hb_000567_300 Hb_000061_360--Hb_005550_040 Hb_000061_360--Hb_003189_020 Hb_001949_010 Hb_001949_010 Hb_000061_360--Hb_001949_010 Hb_022815_020 Hb_022815_020 Hb_000567_300--Hb_022815_020 Hb_000659_010 Hb_000659_010 Hb_000567_300--Hb_000659_010 Hb_001172_030 Hb_001172_030 Hb_000567_300--Hb_001172_030 Hb_000567_300--Hb_005550_040 Hb_003189_020--Hb_005550_040 Hb_105134_010 Hb_105134_010 Hb_003189_020--Hb_105134_010 Hb_178703_010 Hb_178703_010 Hb_003189_020--Hb_178703_010 Hb_046770_010 Hb_046770_010 Hb_003189_020--Hb_046770_010 Hb_032631_080--Hb_001005_210 Hb_032631_080--Hb_000075_030 Hb_001922_010 Hb_001922_010 Hb_032631_080--Hb_001922_010 Hb_001691_060 Hb_001691_060 Hb_032631_080--Hb_001691_060 Hb_109673_010 Hb_109673_010 Hb_032631_080--Hb_109673_010 Hb_005550_040--Hb_178703_010 Hb_005550_040--Hb_001949_010 Hb_005550_040--Hb_046770_010 Hb_005550_040--Hb_105134_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.142349 0.104041 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.86835 0.141345

CAGE analysis