Hb_032631_080

Information

Type -
Description -
Location Contig32631: 56566-62905
Sequence    

Annotation

kegg
ID rcu:RCOM_0468960
description muconate cycloisomerase, putative (EC:5.5.1.1)
nr
ID XP_012078004.1
description PREDICTED: L-Ala-D/L-amino acid epimerase-like isoform X2 [Jatropha curcas]
swissprot
ID B9I2J6
description L-Ala-D/L-amino acid epimerase OS=Populus trichocarpa GN=POPTR_0012s05040g PE=3 SV=2
trembl
ID A0A067K9Q8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13007 PE=4 SV=1
Gene Ontology
ID GO:0018849
description l-ala-d l-amino acid epimerase isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34332: 46364-56025 , PASA_asmbl_34333: 55220-55825 , PASA_asmbl_34334: 52698-56025 , PASA_asmbl_34336: 55215-55825 , PASA_asmbl_34338: 56721-57019 , PASA_asmbl_34339: 60817-61381 , PASA_asmbl_34341: 57024-62875
cDNA
(Sanger)
(ID:Location)		 001_C24.ab1: 60817-61381 , 001_H15.ab1: 60834-61238

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_032631_080 0.0 - - PREDICTED: L-Ala-D/L-amino acid epimerase-like isoform X2 [Jatropha curcas]
2 Hb_001005_210 0.0713460098 - - PREDICTED: chalcone synthase 3 [Jatropha curcas]
3 Hb_000075_030 0.0860787952 - - PREDICTED: aldo-keto reductase family 4 member C10-like [Fragaria vesca subsp. vesca]
4 Hb_001922_010 0.0960635504 - - PREDICTED: ABC transporter G family member 8 [Jatropha curcas]
5 Hb_001691_060 0.1079714476 - - lipoxygenase, putative [Ricinus communis]
6 Hb_109673_010 0.1121069127 - - glutathione s-transferase, putative [Ricinus communis]
7 Hb_004881_080 0.1123481854 - - PREDICTED: glycerol-3-phosphate acyltransferase 1 [Populus euphratica]
8 Hb_006573_250 0.1139387388 - - PREDICTED: ABC transporter G family member 8 [Jatropha curcas]
9 Hb_007101_210 0.1147785767 - - UDP-glucosyltransferase, putative [Ricinus communis]
10 Hb_001279_220 0.1162059319 - - protein binding protein, putative [Ricinus communis]
11 Hb_001545_270 0.1172581348 - - laccase, putative [Ricinus communis]
12 Hb_001004_130 0.1174085709 - - PREDICTED: chalcone synthase 3 [Jatropha curcas]
13 Hb_002218_040 0.1242319922 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000484_040 0.1253674431 - - PREDICTED: zeaxanthin epoxidase, chloroplastic-like [Jatropha curcas]
15 Hb_001454_300 0.1271072321 - - nucleotide binding protein, putative [Ricinus communis]
16 Hb_033363_080 0.1289543602 - - Allene oxide cyclase 3, chloroplast precursor, putative [Ricinus communis]
17 Hb_074892_010 0.1302650575 - - Flavonol 3-sulfotransferase, putative [Ricinus communis]
18 Hb_000844_090 0.1334058945 - - PREDICTED: cytochrome P450 82C4-like [Jatropha curcas]
19 Hb_011145_020 0.1363826137 - - PREDICTED: metalloendoproteinase 1-like [Pyrus x bretschneideri]
20 Hb_001597_110 0.137694609 - - -

Gene co-expression network

sample Hb_032631_080 Hb_032631_080 Hb_001005_210 Hb_001005_210 Hb_032631_080--Hb_001005_210 Hb_000075_030 Hb_000075_030 Hb_032631_080--Hb_000075_030 Hb_001922_010 Hb_001922_010 Hb_032631_080--Hb_001922_010 Hb_001691_060 Hb_001691_060 Hb_032631_080--Hb_001691_060 Hb_109673_010 Hb_109673_010 Hb_032631_080--Hb_109673_010 Hb_004881_080 Hb_004881_080 Hb_032631_080--Hb_004881_080 Hb_001005_210--Hb_000075_030 Hb_001004_130 Hb_001004_130 Hb_001005_210--Hb_001004_130 Hb_000484_040 Hb_000484_040 Hb_001005_210--Hb_000484_040 Hb_000844_090 Hb_000844_090 Hb_001005_210--Hb_000844_090 Hb_001005_210--Hb_001691_060 Hb_000075_030--Hb_001691_060 Hb_002218_040 Hb_002218_040 Hb_000075_030--Hb_002218_040 Hb_000917_330 Hb_000917_330 Hb_000075_030--Hb_000917_330 Hb_000075_030--Hb_001922_010 Hb_001545_270 Hb_001545_270 Hb_001922_010--Hb_001545_270 Hb_008418_010 Hb_008418_010 Hb_001922_010--Hb_008418_010 Hb_000723_240 Hb_000723_240 Hb_001922_010--Hb_000723_240 Hb_001922_010--Hb_001691_060 Hb_011145_020 Hb_011145_020 Hb_001922_010--Hb_011145_020 Hb_001691_060--Hb_011145_020 Hb_000005_350 Hb_000005_350 Hb_001691_060--Hb_000005_350 Hb_001691_060--Hb_000917_330 Hb_000589_100 Hb_000589_100 Hb_001691_060--Hb_000589_100 Hb_001218_070 Hb_001218_070 Hb_109673_010--Hb_001218_070 Hb_046770_010 Hb_046770_010 Hb_109673_010--Hb_046770_010 Hb_109673_010--Hb_001545_270 Hb_033363_080 Hb_033363_080 Hb_109673_010--Hb_033363_080 Hb_004316_130 Hb_004316_130 Hb_109673_010--Hb_004316_130 Hb_004881_080--Hb_002218_040 Hb_000061_360 Hb_000061_360 Hb_004881_080--Hb_000061_360 Hb_000567_300 Hb_000567_300 Hb_004881_080--Hb_000567_300 Hb_003189_020 Hb_003189_020 Hb_004881_080--Hb_003189_020 Hb_005550_040 Hb_005550_040 Hb_004881_080--Hb_005550_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0107929 1.0062 5.59143 3.75523 0 0.0104763
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0730801 29.8606 4.88572

CAGE analysis