Hb_003189_020

Information

Type -
Description -
Location Contig3189: 11329-12473
Sequence    

Annotation

kegg
ID pop:POPTR_0016s02350g
description hypothetical protein
nr
ID XP_012066742.1
description PREDICTED: probable glutathione S-transferase [Jatropha curcas]
swissprot
ID P32110
description Probable glutathione S-transferase OS=Glycine max GN=HSP26-A PE=2 SV=1
trembl
ID A0A067LDC2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00297 PE=3 SV=1
Gene Ontology
ID GO:0005515
description probable glutathione s-transferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003189_020 0.0 - - PREDICTED: probable glutathione S-transferase [Jatropha curcas]
2 Hb_005550_040 0.0608072579 - - PREDICTED: epoxide hydrolase 4-like [Jatropha curcas]
3 Hb_105134_010 0.0911447824 - - hypothetical protein JCGZ_16347 [Jatropha curcas]
4 Hb_178703_010 0.0943323015 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
5 Hb_046770_010 0.0974204983 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000061_360 0.1006800084 - - Brassinosteroid LRR receptor kinase precursor, putative [Ricinus communis]
7 Hb_004881_080 0.1061792511 - - PREDICTED: glycerol-3-phosphate acyltransferase 1 [Populus euphratica]
8 Hb_109673_010 0.11659628 - - glutathione s-transferase, putative [Ricinus communis]
9 Hb_006573_250 0.1238190098 - - PREDICTED: ABC transporter G family member 8 [Jatropha curcas]
10 Hb_032223_020 0.1375576598 - - ATP binding protein, putative [Ricinus communis]
11 Hb_000567_300 0.1390833499 - - PREDICTED: protein YLS9-like [Jatropha curcas]
12 Hb_156499_010 0.1419270647 - - hypothetical protein JCGZ_21064 [Jatropha curcas]
13 Hb_094439_030 0.1476576163 - - PREDICTED: probable S-adenosylmethionine-dependent methyltransferase At5g38780 [Eucalyptus grandis]
14 Hb_001949_010 0.1480550162 - - PREDICTED: VQ motif-containing protein 11 [Jatropha curcas]
15 Hb_001218_070 0.1487242142 - - PREDICTED: sugar transport protein 5-like isoform X1 [Jatropha curcas]
16 Hb_004316_130 0.1521257998 - - PREDICTED: glutathione transferase GST 23-like, partial [Eucalyptus grandis]
17 Hb_000751_050 0.1570539773 - - PREDICTED: extensin, partial [Solanum lycopersicum]
18 Hb_032631_080 0.1616608392 - - PREDICTED: L-Ala-D/L-amino acid epimerase-like isoform X2 [Jatropha curcas]
19 Hb_001545_270 0.1634384837 - - laccase, putative [Ricinus communis]
20 Hb_002218_040 0.1634966029 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003189_020 Hb_003189_020 Hb_005550_040 Hb_005550_040 Hb_003189_020--Hb_005550_040 Hb_105134_010 Hb_105134_010 Hb_003189_020--Hb_105134_010 Hb_178703_010 Hb_178703_010 Hb_003189_020--Hb_178703_010 Hb_046770_010 Hb_046770_010 Hb_003189_020--Hb_046770_010 Hb_000061_360 Hb_000061_360 Hb_003189_020--Hb_000061_360 Hb_004881_080 Hb_004881_080 Hb_003189_020--Hb_004881_080 Hb_005550_040--Hb_178703_010 Hb_005550_040--Hb_000061_360 Hb_001949_010 Hb_001949_010 Hb_005550_040--Hb_001949_010 Hb_005550_040--Hb_046770_010 Hb_005550_040--Hb_105134_010 Hb_105134_010--Hb_046770_010 Hb_094439_030 Hb_094439_030 Hb_105134_010--Hb_094439_030 Hb_156499_010 Hb_156499_010 Hb_105134_010--Hb_156499_010 Hb_026284_010 Hb_026284_010 Hb_105134_010--Hb_026284_010 Hb_032223_020 Hb_032223_020 Hb_178703_010--Hb_032223_020 Hb_006573_250 Hb_006573_250 Hb_178703_010--Hb_006573_250 Hb_178703_010--Hb_001949_010 Hb_000751_050 Hb_000751_050 Hb_178703_010--Hb_000751_050 Hb_001218_070 Hb_001218_070 Hb_046770_010--Hb_001218_070 Hb_109673_010 Hb_109673_010 Hb_046770_010--Hb_109673_010 Hb_000380_130 Hb_000380_130 Hb_046770_010--Hb_000380_130 Hb_000567_300 Hb_000567_300 Hb_000061_360--Hb_000567_300 Hb_000061_360--Hb_004881_080 Hb_000061_360--Hb_001949_010 Hb_002218_040 Hb_002218_040 Hb_000061_360--Hb_002218_040 Hb_004881_080--Hb_002218_040 Hb_004881_080--Hb_000567_300 Hb_032631_080 Hb_032631_080 Hb_004881_080--Hb_032631_080 Hb_004881_080--Hb_005550_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.117225 0.233128 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.35324 0.317219

CAGE analysis