Hb_156499_010

Information

Type -
Description -
Location Contig156499: 2643-2885
Sequence    

Annotation

kegg
ID rcu:RCOM_0751360
description leucine-rich repeat containing protein, putative (EC:3.1.3.16)
nr
ID KDP26031.1
description hypothetical protein JCGZ_21064 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JPZ0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21064 PE=4 SV=1
Gene Ontology
ID GO:0043531
description disease resistance protein rga1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_156499_010 0.0 - - hypothetical protein JCGZ_21064 [Jatropha curcas]
2 Hb_003177_080 0.084032309 - - hypothetical protein L484_016032 [Morus notabilis]
3 Hb_000138_080 0.1122829704 - - conserved hypothetical protein [Ricinus communis]
4 Hb_105134_010 0.1152471137 - - hypothetical protein JCGZ_16347 [Jatropha curcas]
5 Hb_000207_340 0.1226308084 transcription factor TF Family: GRAS hypothetical protein POPTR_0013s11930g [Populus trichocarpa]
6 Hb_001360_060 0.1321092055 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 32 [Jatropha curcas]
7 Hb_009113_010 0.1410803639 - - Chalcone synthase, putative [Ricinus communis]
8 Hb_003189_020 0.1419270647 - - PREDICTED: probable glutathione S-transferase [Jatropha curcas]
9 Hb_003097_200 0.1589427771 - - conserved hypothetical protein [Ricinus communis]
10 Hb_178703_010 0.1614558168 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
11 Hb_078081_020 0.1671928858 - - -
12 Hb_000797_030 0.1686619377 - - PREDICTED: leucoanthocyanidin dioxygenase [Jatropha curcas]
13 Hb_046770_010 0.170451258 - - conserved hypothetical protein [Ricinus communis]
14 Hb_188681_010 0.1716004245 - - hypothetical protein POPTR_0490s00210g, partial [Populus trichocarpa]
15 Hb_000836_480 0.1745180905 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
16 Hb_005550_040 0.1747788353 - - PREDICTED: epoxide hydrolase 4-like [Jatropha curcas]
17 Hb_004316_130 0.1754283076 - - PREDICTED: glutathione transferase GST 23-like, partial [Eucalyptus grandis]
18 Hb_008226_020 0.176068121 - - hypothetical protein JCGZ_03321 [Jatropha curcas]
19 Hb_000163_010 0.1793498407 - - hypothetical protein JCGZ_13952 [Jatropha curcas]
20 Hb_036069_020 0.1836278848 - - PREDICTED: receptor protein kinase-like protein At4g34220 [Jatropha curcas]

Gene co-expression network

sample Hb_156499_010 Hb_156499_010 Hb_003177_080 Hb_003177_080 Hb_156499_010--Hb_003177_080 Hb_000138_080 Hb_000138_080 Hb_156499_010--Hb_000138_080 Hb_105134_010 Hb_105134_010 Hb_156499_010--Hb_105134_010 Hb_000207_340 Hb_000207_340 Hb_156499_010--Hb_000207_340 Hb_001360_060 Hb_001360_060 Hb_156499_010--Hb_001360_060 Hb_009113_010 Hb_009113_010 Hb_156499_010--Hb_009113_010 Hb_003177_080--Hb_001360_060 Hb_003177_080--Hb_000207_340 Hb_003097_200 Hb_003097_200 Hb_003177_080--Hb_003097_200 Hb_000163_010 Hb_000163_010 Hb_003177_080--Hb_000163_010 Hb_003177_080--Hb_000138_080 Hb_000138_080--Hb_009113_010 Hb_000138_080--Hb_000207_340 Hb_188681_010 Hb_188681_010 Hb_000138_080--Hb_188681_010 Hb_000138_080--Hb_001360_060 Hb_003189_020 Hb_003189_020 Hb_105134_010--Hb_003189_020 Hb_046770_010 Hb_046770_010 Hb_105134_010--Hb_046770_010 Hb_005550_040 Hb_005550_040 Hb_105134_010--Hb_005550_040 Hb_094439_030 Hb_094439_030 Hb_105134_010--Hb_094439_030 Hb_026284_010 Hb_026284_010 Hb_105134_010--Hb_026284_010 Hb_000797_030 Hb_000797_030 Hb_000207_340--Hb_000797_030 Hb_000207_340--Hb_003097_200 Hb_000911_050 Hb_000911_050 Hb_000207_340--Hb_000911_050 Hb_036069_020 Hb_036069_020 Hb_000207_340--Hb_036069_020 Hb_003789_020 Hb_003789_020 Hb_001360_060--Hb_003789_020 Hb_001360_060--Hb_003097_200 Hb_001360_060--Hb_000797_030 Hb_011139_010 Hb_011139_010 Hb_001360_060--Hb_011139_010 Hb_009113_010--Hb_188681_010 Hb_009113_010--Hb_000207_340 Hb_009113_010--Hb_105134_010 Hb_144783_010 Hb_144783_010 Hb_009113_010--Hb_144783_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.895415 9.17171 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 24.62 6.53603

CAGE analysis