Hb_003177_080

Information

Type -
Description -
Location Contig3177: 94004-94321
Sequence    

Annotation

kegg
ID cic:CICLE_v10002928mg
description hypothetical protein
nr
ID XP_010104433.1
description hypothetical protein L484_016032 [Morus notabilis]
swissprot
ID P33080
description Auxin-induced protein X10A OS=Glycine max PE=2 SV=1
trembl
ID W9RZ83
description Uncharacterized protein OS=Morus notabilis GN=L484_016032 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33475: 93947-94629
cDNA
(Sanger)
(ID:Location)		 023_C05.ab1: 93947-94534 , 028_F20.ab1: 93947-94534

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003177_080 0.0 - - hypothetical protein L484_016032 [Morus notabilis]
2 Hb_001360_060 0.0823601005 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 32 [Jatropha curcas]
3 Hb_156499_010 0.084032309 - - hypothetical protein JCGZ_21064 [Jatropha curcas]
4 Hb_000207_340 0.1146198467 transcription factor TF Family: GRAS hypothetical protein POPTR_0013s11930g [Populus trichocarpa]
5 Hb_003097_200 0.1245449684 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000163_010 0.1290426876 - - hypothetical protein JCGZ_13952 [Jatropha curcas]
7 Hb_000138_080 0.1321603666 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000797_030 0.1385695827 - - PREDICTED: leucoanthocyanidin dioxygenase [Jatropha curcas]
9 Hb_003913_060 0.1628668849 - - ATP binding protein, putative [Ricinus communis]
10 Hb_003893_100 0.1642185546 - - PREDICTED: uncharacterized protein LOC105648774 [Jatropha curcas]
11 Hb_011139_010 0.1648890126 - - o-methyltransferase, putative [Ricinus communis]
12 Hb_008727_030 0.1673001298 - - conserved hypothetical protein [Ricinus communis]
13 Hb_003789_020 0.170866305 - - hypothetical protein JCGZ_23602 [Jatropha curcas]
14 Hb_002900_040 0.172992504 - - PREDICTED: 7-deoxyloganetic acid glucosyltransferase-like [Populus euphratica]
15 Hb_000911_050 0.1732331563 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 21 [Jatropha curcas]
16 Hb_000836_480 0.1743927961 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
17 Hb_004316_130 0.1759603333 - - PREDICTED: glutathione transferase GST 23-like, partial [Eucalyptus grandis]
18 Hb_011849_020 0.1787571414 - - dioxygenase family protein [Populus trichocarpa]
19 Hb_000139_500 0.1790956614 - - PREDICTED: putative uncharacterized protein DDB_G0286901 [Prunus mume]
20 Hb_009113_010 0.179312135 - - Chalcone synthase, putative [Ricinus communis]

Gene co-expression network

sample Hb_003177_080 Hb_003177_080 Hb_001360_060 Hb_001360_060 Hb_003177_080--Hb_001360_060 Hb_156499_010 Hb_156499_010 Hb_003177_080--Hb_156499_010 Hb_000207_340 Hb_000207_340 Hb_003177_080--Hb_000207_340 Hb_003097_200 Hb_003097_200 Hb_003177_080--Hb_003097_200 Hb_000163_010 Hb_000163_010 Hb_003177_080--Hb_000163_010 Hb_000138_080 Hb_000138_080 Hb_003177_080--Hb_000138_080 Hb_003789_020 Hb_003789_020 Hb_001360_060--Hb_003789_020 Hb_001360_060--Hb_003097_200 Hb_001360_060--Hb_156499_010 Hb_000797_030 Hb_000797_030 Hb_001360_060--Hb_000797_030 Hb_011139_010 Hb_011139_010 Hb_001360_060--Hb_011139_010 Hb_156499_010--Hb_000138_080 Hb_105134_010 Hb_105134_010 Hb_156499_010--Hb_105134_010 Hb_156499_010--Hb_000207_340 Hb_009113_010 Hb_009113_010 Hb_156499_010--Hb_009113_010 Hb_000207_340--Hb_000797_030 Hb_000207_340--Hb_003097_200 Hb_000911_050 Hb_000911_050 Hb_000207_340--Hb_000911_050 Hb_036069_020 Hb_036069_020 Hb_000207_340--Hb_036069_020 Hb_003097_200--Hb_000797_030 Hb_003893_100 Hb_003893_100 Hb_003097_200--Hb_003893_100 Hb_003097_200--Hb_000911_050 Hb_006637_040 Hb_006637_040 Hb_003097_200--Hb_006637_040 Hb_004316_130 Hb_004316_130 Hb_003097_200--Hb_004316_130 Hb_001758_120 Hb_001758_120 Hb_003097_200--Hb_001758_120 Hb_003913_060 Hb_003913_060 Hb_000163_010--Hb_003913_060 Hb_011849_020 Hb_011849_020 Hb_000163_010--Hb_011849_020 Hb_003398_090 Hb_003398_090 Hb_000163_010--Hb_003398_090 Hb_015978_010 Hb_015978_010 Hb_000163_010--Hb_015978_010 Hb_000318_060 Hb_000318_060 Hb_000163_010--Hb_000318_060 Hb_000138_080--Hb_009113_010 Hb_000138_080--Hb_000207_340 Hb_188681_010 Hb_188681_010 Hb_000138_080--Hb_188681_010 Hb_000138_080--Hb_001360_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.2499 1.67941 20.4176 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 39.9246 8.55201

CAGE analysis