Hb_000138_080

Information

Type -
Description -
Location Contig138: 209651-210709
Sequence    

Annotation

kegg
ID rcu:RCOM_0446220
description hypothetical protein
nr
ID XP_002534370.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T801
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0446220 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10484: 209594-209828 , PASA_asmbl_10485: 210413-210671
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000138_080 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_156499_010 0.1122829704 - - hypothetical protein JCGZ_21064 [Jatropha curcas]
3 Hb_003177_080 0.1321603666 - - hypothetical protein L484_016032 [Morus notabilis]
4 Hb_009113_010 0.1349004947 - - Chalcone synthase, putative [Ricinus communis]
5 Hb_000207_340 0.1450555446 transcription factor TF Family: GRAS hypothetical protein POPTR_0013s11930g [Populus trichocarpa]
6 Hb_188681_010 0.1769220914 - - hypothetical protein POPTR_0490s00210g, partial [Populus trichocarpa]
7 Hb_001360_060 0.177295582 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 32 [Jatropha curcas]
8 Hb_105134_010 0.1797783017 - - hypothetical protein JCGZ_16347 [Jatropha curcas]
9 Hb_104835_010 0.1845700727 - - PREDICTED: probable protein Pop3 [Jatropha curcas]
10 Hb_000982_120 0.193660976 transcription factor TF Family: Orphans sensory transduction histidine kinase bacterial, putative [Ricinus communis]
11 Hb_078081_020 0.2021132303 - - -
12 Hb_002566_010 0.2023698467 - - PREDICTED: uncharacterized protein LOC105643984 isoform X1 [Jatropha curcas]
13 Hb_002042_040 0.2038123279 - - hypothetical protein POPTR_0013s02440g [Populus trichocarpa]
14 Hb_002900_040 0.2046451417 - - PREDICTED: 7-deoxyloganetic acid glucosyltransferase-like [Populus euphratica]
15 Hb_000163_010 0.2047950906 - - hypothetical protein JCGZ_13952 [Jatropha curcas]
16 Hb_000009_430 0.2156622074 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001148_050 0.2201793599 - - -
18 Hb_002157_060 0.2202525094 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 9 [Jatropha curcas]
19 Hb_003097_200 0.2251234294 - - conserved hypothetical protein [Ricinus communis]
20 Hb_011849_020 0.2299166019 - - dioxygenase family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_000138_080 Hb_000138_080 Hb_156499_010 Hb_156499_010 Hb_000138_080--Hb_156499_010 Hb_003177_080 Hb_003177_080 Hb_000138_080--Hb_003177_080 Hb_009113_010 Hb_009113_010 Hb_000138_080--Hb_009113_010 Hb_000207_340 Hb_000207_340 Hb_000138_080--Hb_000207_340 Hb_188681_010 Hb_188681_010 Hb_000138_080--Hb_188681_010 Hb_001360_060 Hb_001360_060 Hb_000138_080--Hb_001360_060 Hb_156499_010--Hb_003177_080 Hb_105134_010 Hb_105134_010 Hb_156499_010--Hb_105134_010 Hb_156499_010--Hb_000207_340 Hb_156499_010--Hb_001360_060 Hb_156499_010--Hb_009113_010 Hb_003177_080--Hb_001360_060 Hb_003177_080--Hb_000207_340 Hb_003097_200 Hb_003097_200 Hb_003177_080--Hb_003097_200 Hb_000163_010 Hb_000163_010 Hb_003177_080--Hb_000163_010 Hb_009113_010--Hb_188681_010 Hb_009113_010--Hb_000207_340 Hb_009113_010--Hb_105134_010 Hb_144783_010 Hb_144783_010 Hb_009113_010--Hb_144783_010 Hb_000797_030 Hb_000797_030 Hb_000207_340--Hb_000797_030 Hb_000207_340--Hb_003097_200 Hb_000911_050 Hb_000911_050 Hb_000207_340--Hb_000911_050 Hb_036069_020 Hb_036069_020 Hb_000207_340--Hb_036069_020 Hb_188681_010--Hb_105134_010 Hb_188681_010--Hb_000207_340 Hb_188681_010--Hb_144783_010 Hb_188681_010--Hb_156499_010 Hb_000161_250 Hb_000161_250 Hb_188681_010--Hb_000161_250 Hb_003789_020 Hb_003789_020 Hb_001360_060--Hb_003789_020 Hb_001360_060--Hb_003097_200 Hb_001360_060--Hb_000797_030 Hb_011139_010 Hb_011139_010 Hb_001360_060--Hb_011139_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.175477 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.377689 0.115934

CAGE analysis