Hb_188681_010

Information

Type -
Description -
Location Contig188681: 559-1544
Sequence    

Annotation

kegg
ID pop:POPTR_0490s00210g
description hypothetical protein
nr
ID XP_006387900.1
description hypothetical protein POPTR_0490s00210g, partial [Populus trichocarpa]
swissprot
ID Q39152
description Fatty acyl-CoA reductase 1 OS=Arabidopsis thaliana GN=FAR1 PE=2 SV=1
trembl
ID U7DXA8
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0490s00210g PE=4 SV=1
Gene Ontology
ID GO:0080019
description alcohol-forming fatty acyl- reductase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_188681_010 0.0 - - hypothetical protein POPTR_0490s00210g, partial [Populus trichocarpa]
2 Hb_009113_010 0.0439723407 - - Chalcone synthase, putative [Ricinus communis]
3 Hb_105134_010 0.1445052039 - - hypothetical protein JCGZ_16347 [Jatropha curcas]
4 Hb_000207_340 0.1540880184 transcription factor TF Family: GRAS hypothetical protein POPTR_0013s11930g [Populus trichocarpa]
5 Hb_144783_010 0.1574744713 - - glutathione s-transferase, putative [Ricinus communis]
6 Hb_156499_010 0.1716004245 - - hypothetical protein JCGZ_21064 [Jatropha curcas]
7 Hb_000161_250 0.1766421662 transcription factor TF Family: Tify conserved hypothetical protein [Ricinus communis]
8 Hb_000138_080 0.1769220914 - - conserved hypothetical protein [Ricinus communis]
9 Hb_004316_130 0.1784654069 - - PREDICTED: glutathione transferase GST 23-like, partial [Eucalyptus grandis]
10 Hb_000466_090 0.1807170642 - - PREDICTED: E3 ubiquitin-protein ligase RGLG2-like isoform X1 [Jatropha curcas]
11 Hb_003189_020 0.1859624443 - - PREDICTED: probable glutathione S-transferase [Jatropha curcas]
12 Hb_000200_180 0.1895324131 - - -
13 Hb_000116_550 0.1896356687 - - conserved hypothetical protein [Ricinus communis]
14 Hb_046770_010 0.1900105976 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002475_070 0.1915457372 - - hypothetical protein POPTR_0017s02440g, partial [Populus trichocarpa]
16 Hb_109673_010 0.1974380103 - - glutathione s-transferase, putative [Ricinus communis]
17 Hb_094439_030 0.1975230496 - - PREDICTED: probable S-adenosylmethionine-dependent methyltransferase At5g38780 [Eucalyptus grandis]
18 Hb_003189_030 0.210223636 - - hypothetical protein Csa_4G304750 [Cucumis sativus]
19 Hb_011671_420 0.2111645306 - - hypothetical protein POPTR_0015s12340g [Populus trichocarpa]
20 Hb_006620_040 0.2111761451 - - PREDICTED: probable 6-phosphogluconolactonase 1 [Jatropha curcas]

Gene co-expression network

sample Hb_188681_010 Hb_188681_010 Hb_009113_010 Hb_009113_010 Hb_188681_010--Hb_009113_010 Hb_105134_010 Hb_105134_010 Hb_188681_010--Hb_105134_010 Hb_000207_340 Hb_000207_340 Hb_188681_010--Hb_000207_340 Hb_144783_010 Hb_144783_010 Hb_188681_010--Hb_144783_010 Hb_156499_010 Hb_156499_010 Hb_188681_010--Hb_156499_010 Hb_000161_250 Hb_000161_250 Hb_188681_010--Hb_000161_250 Hb_009113_010--Hb_000207_340 Hb_000138_080 Hb_000138_080 Hb_009113_010--Hb_000138_080 Hb_009113_010--Hb_105134_010 Hb_009113_010--Hb_156499_010 Hb_009113_010--Hb_144783_010 Hb_003189_020 Hb_003189_020 Hb_105134_010--Hb_003189_020 Hb_046770_010 Hb_046770_010 Hb_105134_010--Hb_046770_010 Hb_005550_040 Hb_005550_040 Hb_105134_010--Hb_005550_040 Hb_094439_030 Hb_094439_030 Hb_105134_010--Hb_094439_030 Hb_105134_010--Hb_156499_010 Hb_026284_010 Hb_026284_010 Hb_105134_010--Hb_026284_010 Hb_003177_080 Hb_003177_080 Hb_000207_340--Hb_003177_080 Hb_000797_030 Hb_000797_030 Hb_000207_340--Hb_000797_030 Hb_003097_200 Hb_003097_200 Hb_000207_340--Hb_003097_200 Hb_000207_340--Hb_156499_010 Hb_000911_050 Hb_000911_050 Hb_000207_340--Hb_000911_050 Hb_036069_020 Hb_036069_020 Hb_000207_340--Hb_036069_020 Hb_002475_070 Hb_002475_070 Hb_144783_010--Hb_002475_070 Hb_000200_180 Hb_000200_180 Hb_144783_010--Hb_000200_180 Hb_004316_130 Hb_004316_130 Hb_144783_010--Hb_004316_130 Hb_000297_180 Hb_000297_180 Hb_144783_010--Hb_000297_180 Hb_002521_010 Hb_002521_010 Hb_144783_010--Hb_002521_010 Hb_003893_100 Hb_003893_100 Hb_144783_010--Hb_003893_100 Hb_156499_010--Hb_003177_080 Hb_156499_010--Hb_000138_080 Hb_001360_060 Hb_001360_060 Hb_156499_010--Hb_001360_060 Hb_000076_200 Hb_000076_200 Hb_000161_250--Hb_000076_200 Hb_004037_010 Hb_004037_010 Hb_000161_250--Hb_004037_010 Hb_000116_550 Hb_000116_550 Hb_000161_250--Hb_000116_550 Hb_000161_250--Hb_000200_180 Hb_000161_250--Hb_002521_010 Hb_000161_250--Hb_144783_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.216575 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.23932 0.177945

CAGE analysis