Hb_000200_180

Information

Type -
Description -
Location Contig200: 217535-218045
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000200_180 0.0 - - -
2 Hb_002521_010 0.090461528 - - cinnamate 4-hydroxylase, putative [Ricinus communis]
3 Hb_124247_030 0.0928031328 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase PREDICTED: probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic [Jatropha curcas]
4 Hb_144783_010 0.0929870237 - - glutathione s-transferase, putative [Ricinus communis]
5 Hb_006153_190 0.1099011554 - - PREDICTED: 14 kDa proline-rich protein DC2.15-like [Gossypium raimondii]
6 Hb_004037_010 0.1142407029 - - PREDICTED: uncharacterized protein LOC105632369 [Jatropha curcas]
7 Hb_126535_010 0.1144401236 - - hypothetical protein JCGZ_09554 [Jatropha curcas]
8 Hb_000318_440 0.118734113 - - PREDICTED: allene oxide synthase 2-like [Jatropha curcas]
9 Hb_000161_250 0.1198855971 transcription factor TF Family: Tify conserved hypothetical protein [Ricinus communis]
10 Hb_000076_200 0.1247998643 - - conserved hypothetical protein [Ricinus communis]
11 Hb_175167_020 0.1273241001 - - conserved hypothetical protein [Ricinus communis]
12 Hb_007532_050 0.128291577 - - 9-cis-epoxycarotenoid dioxygenase, putative [Ricinus communis]
13 Hb_000021_090 0.1292351874 - - -
14 Hb_177880_010 0.1294694386 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
15 Hb_004834_020 0.1313071578 - - major allergen Pru ar 1-like [Jatropha curcas]
16 Hb_035583_010 0.1324690195 - - PREDICTED: premnaspirodiene oxygenase-like [Jatropha curcas]
17 Hb_028008_010 0.1327793741 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 23 [Jatropha curcas]
18 Hb_000720_010 0.1333521662 - - Lignin-forming anionic peroxidase precursor, putative [Ricinus communis]
19 Hb_011161_060 0.1336930792 transcription factor TF Family: GRAS PREDICTED: nodulation-signaling pathway 2 protein [Jatropha curcas]
20 Hb_000671_010 0.1340945448 - - PREDICTED: 7-deoxyloganetin glucosyltransferase-like [Jatropha curcas]

Gene co-expression network

sample Hb_000200_180 Hb_000200_180 Hb_002521_010 Hb_002521_010 Hb_000200_180--Hb_002521_010 Hb_124247_030 Hb_124247_030 Hb_000200_180--Hb_124247_030 Hb_144783_010 Hb_144783_010 Hb_000200_180--Hb_144783_010 Hb_006153_190 Hb_006153_190 Hb_000200_180--Hb_006153_190 Hb_004037_010 Hb_004037_010 Hb_000200_180--Hb_004037_010 Hb_126535_010 Hb_126535_010 Hb_000200_180--Hb_126535_010 Hb_028008_010 Hb_028008_010 Hb_002521_010--Hb_028008_010 Hb_002521_010--Hb_006153_190 Hb_000021_090 Hb_000021_090 Hb_002521_010--Hb_000021_090 Hb_002521_010--Hb_144783_010 Hb_000513_100 Hb_000513_100 Hb_002521_010--Hb_000513_100 Hb_124247_030--Hb_126535_010 Hb_177880_010 Hb_177880_010 Hb_124247_030--Hb_177880_010 Hb_025490_030 Hb_025490_030 Hb_124247_030--Hb_025490_030 Hb_004834_020 Hb_004834_020 Hb_124247_030--Hb_004834_020 Hb_124247_030--Hb_000021_090 Hb_007320_040 Hb_007320_040 Hb_124247_030--Hb_007320_040 Hb_002475_070 Hb_002475_070 Hb_144783_010--Hb_002475_070 Hb_004316_130 Hb_004316_130 Hb_144783_010--Hb_004316_130 Hb_000297_180 Hb_000297_180 Hb_144783_010--Hb_000297_180 Hb_003893_100 Hb_003893_100 Hb_144783_010--Hb_003893_100 Hb_000720_010 Hb_000720_010 Hb_006153_190--Hb_000720_010 Hb_009545_040 Hb_009545_040 Hb_006153_190--Hb_009545_040 Hb_011161_060 Hb_011161_060 Hb_006153_190--Hb_011161_060 Hb_000671_010 Hb_000671_010 Hb_006153_190--Hb_000671_010 Hb_001213_010 Hb_001213_010 Hb_006153_190--Hb_001213_010 Hb_006153_190--Hb_126535_010 Hb_004037_010--Hb_009545_040 Hb_000120_440 Hb_000120_440 Hb_004037_010--Hb_000120_440 Hb_004037_010--Hb_000021_090 Hb_004037_010--Hb_025490_030 Hb_001165_040 Hb_001165_040 Hb_004037_010--Hb_001165_040 Hb_000076_200 Hb_000076_200 Hb_004037_010--Hb_000076_200 Hb_126535_010--Hb_177880_010 Hb_175167_020 Hb_175167_020 Hb_126535_010--Hb_175167_020 Hb_126535_010--Hb_004834_020 Hb_126535_010--Hb_007320_040 Hb_126535_010--Hb_011161_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.192921 0.416129 1.59171 18.5299 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.453043 0 0 142.781 3.1668

CAGE analysis