Hb_124247_030

Information

Type rubber biosynthesis
Description Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase
Location Contig124247: 8553-13434
Sequence    

Annotation

kegg
ID rcu:RCOM_0025610
description 1-deoxyxylulose-5-phosphate synthase, putative (EC:2.2.1.7)
nr
ID XP_012065282.1
description PREDICTED: probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic [Jatropha curcas]
swissprot
ID Q6YU51
description Probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic OS=Oryza sativa subsp. japonica GN=Os07g0190000 PE=2 SV=1
trembl
ID A0A067LHX1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23012 PE=3 SV=1
Gene Ontology
ID GO:0008661
description probable 1-deoxy-d-xylulose-5-phosphate synthase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_124247_030 0.0 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase PREDICTED: probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic [Jatropha curcas]
2 Hb_126535_010 0.0586114865 - - hypothetical protein JCGZ_09554 [Jatropha curcas]
3 Hb_177880_010 0.0627711748 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
4 Hb_025490_030 0.0726010647 - - PREDICTED: uncharacterized protein LOC105629177 [Jatropha curcas]
5 Hb_004834_020 0.0729960791 - - major allergen Pru ar 1-like [Jatropha curcas]
6 Hb_000021_090 0.0781351725 - - -
7 Hb_007320_040 0.0843108546 - - PREDICTED: U-box domain-containing protein 26-like [Jatropha curcas]
8 Hb_006153_190 0.0864369221 - - PREDICTED: 14 kDa proline-rich protein DC2.15-like [Gossypium raimondii]
9 Hb_004037_010 0.0871121023 - - PREDICTED: uncharacterized protein LOC105632369 [Jatropha curcas]
10 Hb_000200_180 0.0928031328 - - -
11 Hb_002757_050 0.0961512271 - - PREDICTED: O-acyltransferase WSD1-like isoform X1 [Populus euphratica]
12 Hb_000205_290 0.0961862328 - - -
13 Hb_000671_010 0.0977595846 - - PREDICTED: 7-deoxyloganetin glucosyltransferase-like [Jatropha curcas]
14 Hb_011161_060 0.0984340012 transcription factor TF Family: GRAS PREDICTED: nodulation-signaling pathway 2 protein [Jatropha curcas]
15 Hb_175167_020 0.0994945445 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000948_040 0.1023367099 - - PREDICTED: germin-like protein subfamily 1 member 13 [Jatropha curcas]
17 Hb_000318_440 0.1025482171 - - PREDICTED: allene oxide synthase 2-like [Jatropha curcas]
18 Hb_000059_100 0.1026469276 - - Basic blue protein, putative [Ricinus communis]
19 Hb_009545_040 0.1031152095 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002521_010 0.1046637354 - - cinnamate 4-hydroxylase, putative [Ricinus communis]

Gene co-expression network

sample Hb_124247_030 Hb_124247_030 Hb_126535_010 Hb_126535_010 Hb_124247_030--Hb_126535_010 Hb_177880_010 Hb_177880_010 Hb_124247_030--Hb_177880_010 Hb_025490_030 Hb_025490_030 Hb_124247_030--Hb_025490_030 Hb_004834_020 Hb_004834_020 Hb_124247_030--Hb_004834_020 Hb_000021_090 Hb_000021_090 Hb_124247_030--Hb_000021_090 Hb_007320_040 Hb_007320_040 Hb_124247_030--Hb_007320_040 Hb_126535_010--Hb_177880_010 Hb_175167_020 Hb_175167_020 Hb_126535_010--Hb_175167_020 Hb_126535_010--Hb_004834_020 Hb_126535_010--Hb_007320_040 Hb_011161_060 Hb_011161_060 Hb_126535_010--Hb_011161_060 Hb_177880_010--Hb_007320_040 Hb_177880_010--Hb_004834_020 Hb_177880_010--Hb_175167_020 Hb_002966_030 Hb_002966_030 Hb_177880_010--Hb_002966_030 Hb_025490_030--Hb_000021_090 Hb_009545_040 Hb_009545_040 Hb_025490_030--Hb_009545_040 Hb_004037_010 Hb_004037_010 Hb_025490_030--Hb_004037_010 Hb_001165_040 Hb_001165_040 Hb_025490_030--Hb_001165_040 Hb_005066_010 Hb_005066_010 Hb_025490_030--Hb_005066_010 Hb_004834_020--Hb_007320_040 Hb_004834_020--Hb_175167_020 Hb_004834_020--Hb_002966_030 Hb_000120_440 Hb_000120_440 Hb_000021_090--Hb_000120_440 Hb_000021_090--Hb_009545_040 Hb_000021_090--Hb_004037_010 Hb_006153_190 Hb_006153_190 Hb_000021_090--Hb_006153_190 Hb_007320_040--Hb_002966_030 Hb_002747_010 Hb_002747_010 Hb_007320_040--Hb_002747_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0216666 0.155699 0.985217 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 10.2314 0.0311409

CAGE analysis