Hb_009545_040

Information

Type -
Description -
Location Contig9545: 36410-36742
Sequence    

Annotation

kegg
ID rcu:RCOM_0911850
description hypothetical protein
nr
ID XP_002517118.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RTP9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0911850 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63497: 36538-36867
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009545_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000120_440 0.0520038408 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001165_040 0.0558167689 - - hypothetical protein POPTR_0009s10120g [Populus trichocarpa]
4 Hb_000021_090 0.0589874843 - - -
5 Hb_004037_010 0.0658672556 - - PREDICTED: uncharacterized protein LOC105632369 [Jatropha curcas]
6 Hb_025490_030 0.0714145629 - - PREDICTED: uncharacterized protein LOC105629177 [Jatropha curcas]
7 Hb_006153_190 0.0813783742 - - PREDICTED: 14 kDa proline-rich protein DC2.15-like [Gossypium raimondii]
8 Hb_002757_050 0.0968864004 - - PREDICTED: O-acyltransferase WSD1-like isoform X1 [Populus euphratica]
9 Hb_000205_290 0.0972965055 - - -
10 Hb_000005_270 0.0973573177 - - Xyloglucan endotransglucosylase/hydrolase protein 2 precursor, putative [Ricinus communis]
11 Hb_000671_010 0.0982125875 - - PREDICTED: 7-deoxyloganetin glucosyltransferase-like [Jatropha curcas]
12 Hb_011161_060 0.0988101865 transcription factor TF Family: GRAS PREDICTED: nodulation-signaling pathway 2 protein [Jatropha curcas]
13 Hb_124247_030 0.1031152095 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase PREDICTED: probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic [Jatropha curcas]
14 Hb_000948_040 0.1039930761 - - PREDICTED: germin-like protein subfamily 1 member 13 [Jatropha curcas]
15 Hb_000720_010 0.107879566 - - Lignin-forming anionic peroxidase precursor, putative [Ricinus communis]
16 Hb_005066_010 0.108719559 - - FAD-binding domain-containing family protein [Populus trichocarpa]
17 Hb_033865_020 0.1105222028 - - -
18 Hb_002835_030 0.1177418366 - - PREDICTED: lysM domain receptor-like kinase 4 [Vitis vinifera]
19 Hb_000045_230 0.1178918372 - - PREDICTED: uncharacterized acetyltransferase At3g50280 [Jatropha curcas]
20 Hb_126535_010 0.1184761268 - - hypothetical protein JCGZ_09554 [Jatropha curcas]

Gene co-expression network

sample Hb_009545_040 Hb_009545_040 Hb_000120_440 Hb_000120_440 Hb_009545_040--Hb_000120_440 Hb_001165_040 Hb_001165_040 Hb_009545_040--Hb_001165_040 Hb_000021_090 Hb_000021_090 Hb_009545_040--Hb_000021_090 Hb_004037_010 Hb_004037_010 Hb_009545_040--Hb_004037_010 Hb_025490_030 Hb_025490_030 Hb_009545_040--Hb_025490_030 Hb_006153_190 Hb_006153_190 Hb_009545_040--Hb_006153_190 Hb_000120_440--Hb_000021_090 Hb_000120_440--Hb_001165_040 Hb_000120_440--Hb_004037_010 Hb_000005_270 Hb_000005_270 Hb_000120_440--Hb_000005_270 Hb_000513_110 Hb_000513_110 Hb_000120_440--Hb_000513_110 Hb_002835_030 Hb_002835_030 Hb_001165_040--Hb_002835_030 Hb_000462_100 Hb_000462_100 Hb_001165_040--Hb_000462_100 Hb_010839_040 Hb_010839_040 Hb_001165_040--Hb_010839_040 Hb_001165_040--Hb_004037_010 Hb_000021_090--Hb_025490_030 Hb_000021_090--Hb_004037_010 Hb_124247_030 Hb_124247_030 Hb_000021_090--Hb_124247_030 Hb_000021_090--Hb_006153_190 Hb_004037_010--Hb_025490_030 Hb_000076_200 Hb_000076_200 Hb_004037_010--Hb_000076_200 Hb_025490_030--Hb_124247_030 Hb_025490_030--Hb_001165_040 Hb_005066_010 Hb_005066_010 Hb_025490_030--Hb_005066_010 Hb_000720_010 Hb_000720_010 Hb_006153_190--Hb_000720_010 Hb_011161_060 Hb_011161_060 Hb_006153_190--Hb_011161_060 Hb_000671_010 Hb_000671_010 Hb_006153_190--Hb_000671_010 Hb_001213_010 Hb_001213_010 Hb_006153_190--Hb_001213_010 Hb_126535_010 Hb_126535_010 Hb_006153_190--Hb_126535_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.23017 0.0991403 6.27274 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 63.9067 0

CAGE analysis