Hb_000005_270

Information

Type -
Description -
Location Contig5: 316802-318693
Sequence    

Annotation

kegg
ID rcu:RCOM_0474040
description Xyloglucan endotransglucosylase/hydrolase protein 2 precursor, putative (EC:2.4.1.207)
nr
ID XP_002523709.1
description Xyloglucan endotransglucosylase/hydrolase protein 2 precursor, putative [Ricinus communis]
swissprot
ID Q9SJL9
description Probable xyloglucan endotransglucosylase/hydrolase protein 32 OS=Arabidopsis thaliana GN=XTH32 PE=2 SV=1
trembl
ID B9SCJ0
description Xyloglucan endotransglucosylase/hydrolase OS=Ricinus communis GN=RCOM_0474040 PE=3 SV=1
Gene Ontology
ID GO:0005618
description probable xyloglucan endotransglucosylase hydrolase protein 31

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000005_270 0.0 - - Xyloglucan endotransglucosylase/hydrolase protein 2 precursor, putative [Ricinus communis]
2 Hb_000120_440 0.0683952169 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000513_110 0.0873491497 - - PREDICTED: germin-like protein subfamily 1 member 13 [Populus euphratica]
4 Hb_045992_010 0.0878206842 - - -
5 Hb_000021_090 0.0887579573 - - -
6 Hb_000120_710 0.0897743074 - - unnamed protein product [Vitis vinifera]
7 Hb_009545_040 0.0973573177 - - conserved hypothetical protein [Ricinus communis]
8 Hb_006538_070 0.1022130745 - - hypothetical protein JCGZ_18339 [Jatropha curcas]
9 Hb_001218_020 0.1080503285 transcription factor TF Family: MYB hypothetical protein POPTR_0005s17080g [Populus trichocarpa]
10 Hb_000301_030 0.1083282613 - - PREDICTED: pectate lyase-like [Jatropha curcas]
11 Hb_005356_010 0.1091742779 - - hypothetical protein POPTR_0003s16550g [Populus trichocarpa]
12 Hb_004037_010 0.1128776179 - - PREDICTED: uncharacterized protein LOC105632369 [Jatropha curcas]
13 Hb_001901_010 0.1141043078 - - PREDICTED: alpha carbonic anhydrase 7-like [Jatropha curcas]
14 Hb_000617_340 0.1153084738 - - respiratory burst oxidase B [Manihot esculenta]
15 Hb_002521_010 0.1157352886 - - cinnamate 4-hydroxylase, putative [Ricinus communis]
16 Hb_164162_020 0.1172041276 - - PREDICTED: uncharacterized protein LOC105646964 [Jatropha curcas]
17 Hb_001544_040 0.1177314546 - - PREDICTED: uncharacterized protein At1g66480-like [Populus euphratica]
18 Hb_028008_010 0.1181532041 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 23 [Jatropha curcas]
19 Hb_001165_040 0.1232615251 - - hypothetical protein POPTR_0009s10120g [Populus trichocarpa]
20 Hb_007527_020 0.123543275 - - PREDICTED: feruloyl CoA ortho-hydroxylase 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000005_270 Hb_000005_270 Hb_000120_440 Hb_000120_440 Hb_000005_270--Hb_000120_440 Hb_000513_110 Hb_000513_110 Hb_000005_270--Hb_000513_110 Hb_045992_010 Hb_045992_010 Hb_000005_270--Hb_045992_010 Hb_000021_090 Hb_000021_090 Hb_000005_270--Hb_000021_090 Hb_000120_710 Hb_000120_710 Hb_000005_270--Hb_000120_710 Hb_009545_040 Hb_009545_040 Hb_000005_270--Hb_009545_040 Hb_000120_440--Hb_009545_040 Hb_000120_440--Hb_000021_090 Hb_001165_040 Hb_001165_040 Hb_000120_440--Hb_001165_040 Hb_004037_010 Hb_004037_010 Hb_000120_440--Hb_004037_010 Hb_000120_440--Hb_000513_110 Hb_000513_110--Hb_000120_710 Hb_003253_020 Hb_003253_020 Hb_000513_110--Hb_003253_020 Hb_000617_340 Hb_000617_340 Hb_000513_110--Hb_000617_340 Hb_001544_040 Hb_001544_040 Hb_000513_110--Hb_001544_040 Hb_007527_020 Hb_007527_020 Hb_000513_110--Hb_007527_020 Hb_001901_090 Hb_001901_090 Hb_000513_110--Hb_001901_090 Hb_001901_010 Hb_001901_010 Hb_045992_010--Hb_001901_010 Hb_001218_020 Hb_001218_020 Hb_045992_010--Hb_001218_020 Hb_006153_200 Hb_006153_200 Hb_045992_010--Hb_006153_200 Hb_045992_010--Hb_000120_440 Hb_002999_090 Hb_002999_090 Hb_045992_010--Hb_002999_090 Hb_000021_090--Hb_009545_040 Hb_025490_030 Hb_025490_030 Hb_000021_090--Hb_025490_030 Hb_000021_090--Hb_004037_010 Hb_124247_030 Hb_124247_030 Hb_000021_090--Hb_124247_030 Hb_006153_190 Hb_006153_190 Hb_000021_090--Hb_006153_190 Hb_006538_050 Hb_006538_050 Hb_000120_710--Hb_006538_050 Hb_001328_110 Hb_001328_110 Hb_000120_710--Hb_001328_110 Hb_000120_710--Hb_001544_040 Hb_000120_710--Hb_000617_340 Hb_000120_710--Hb_003253_020 Hb_009545_040--Hb_001165_040 Hb_009545_040--Hb_004037_010 Hb_009545_040--Hb_025490_030 Hb_009545_040--Hb_006153_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0392075 3.18071 0.58698 7.73776 0.0163514 0.0182432
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0398551 0 0 57.8931 0

CAGE analysis