Hb_001218_020

Information

Type transcription factor
Description TF Family: MYB
Location Contig1218: 44634-45853
Sequence    

Annotation

kegg
ID pop:POPTR_0005s17080g
description POPTRDRAFT_559105; hypothetical protein
nr
ID XP_002307380.1
description hypothetical protein POPTR_0005s17080g [Populus trichocarpa]
swissprot
ID Q8GWP0
description Transcription factor MYB39 OS=Arabidopsis thaliana GN=MYB39 PE=2 SV=1
trembl
ID B9H732
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s17080g PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription factor myb39-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001218_020 0.0 transcription factor TF Family: MYB hypothetical protein POPTR_0005s17080g [Populus trichocarpa]
2 Hb_000120_710 0.0784221477 - - unnamed protein product [Vitis vinifera]
3 Hb_003855_070 0.0891643479 - - hypothetical protein POPTR_0001s30980g [Populus trichocarpa]
4 Hb_045992_010 0.0948713637 - - -
5 Hb_001328_110 0.0977477409 - - PREDICTED: LON peptidase N-terminal domain and RING finger protein 1-like [Jatropha curcas]
6 Hb_006538_050 0.0977858393 - - hypothetical protein RCOM_1308310 [Ricinus communis]
7 Hb_000003_470 0.0982812797 - - conserved hypothetical protein [Ricinus communis]
8 Hb_006153_200 0.099336798 - - Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein [Theobroma cacao]
9 Hb_000301_030 0.0999524238 - - PREDICTED: pectate lyase-like [Jatropha curcas]
10 Hb_001901_010 0.1007590311 - - PREDICTED: alpha carbonic anhydrase 7-like [Jatropha curcas]
11 Hb_011856_010 0.1024964573 - - cytochrome P450, putative [Ricinus communis]
12 Hb_000948_070 0.1060886511 - - hypothetical protein POPTR_0016s01720g [Populus trichocarpa]
13 Hb_000005_270 0.1080503285 - - Xyloglucan endotransglucosylase/hydrolase protein 2 precursor, putative [Ricinus communis]
14 Hb_139460_010 0.1098105245 - - PREDICTED: beta-glucosidase 18-like [Jatropha curcas]
15 Hb_025526_090 0.1113477259 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 [Jatropha curcas]
16 Hb_002999_090 0.1150250024 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001544_040 0.1188558613 - - PREDICTED: uncharacterized protein At1g66480-like [Populus euphratica]
18 Hb_002615_050 0.1191736969 - - ATP-binding cassette transporter, putative [Ricinus communis]
19 Hb_000567_310 0.1194303746 - - Miraculin precursor, putative [Ricinus communis]
20 Hb_005356_010 0.1196400337 - - hypothetical protein POPTR_0003s16550g [Populus trichocarpa]

Gene co-expression network

sample Hb_001218_020 Hb_001218_020 Hb_000120_710 Hb_000120_710 Hb_001218_020--Hb_000120_710 Hb_003855_070 Hb_003855_070 Hb_001218_020--Hb_003855_070 Hb_045992_010 Hb_045992_010 Hb_001218_020--Hb_045992_010 Hb_001328_110 Hb_001328_110 Hb_001218_020--Hb_001328_110 Hb_006538_050 Hb_006538_050 Hb_001218_020--Hb_006538_050 Hb_000003_470 Hb_000003_470 Hb_001218_020--Hb_000003_470 Hb_000120_710--Hb_006538_050 Hb_000120_710--Hb_001328_110 Hb_001544_040 Hb_001544_040 Hb_000120_710--Hb_001544_040 Hb_000617_340 Hb_000617_340 Hb_000120_710--Hb_000617_340 Hb_000513_110 Hb_000513_110 Hb_000120_710--Hb_000513_110 Hb_003253_020 Hb_003253_020 Hb_000120_710--Hb_003253_020 Hb_000301_030 Hb_000301_030 Hb_003855_070--Hb_000301_030 Hb_025526_090 Hb_025526_090 Hb_003855_070--Hb_025526_090 Hb_003855_070--Hb_000120_710 Hb_003855_070--Hb_001328_110 Hb_107258_010 Hb_107258_010 Hb_003855_070--Hb_107258_010 Hb_003855_070--Hb_000003_470 Hb_001901_010 Hb_001901_010 Hb_045992_010--Hb_001901_010 Hb_000005_270 Hb_000005_270 Hb_045992_010--Hb_000005_270 Hb_006153_200 Hb_006153_200 Hb_045992_010--Hb_006153_200 Hb_000120_440 Hb_000120_440 Hb_045992_010--Hb_000120_440 Hb_002999_090 Hb_002999_090 Hb_045992_010--Hb_002999_090 Hb_008705_070 Hb_008705_070 Hb_001328_110--Hb_008705_070 Hb_003052_070 Hb_003052_070 Hb_001328_110--Hb_003052_070 Hb_001328_110--Hb_006538_050 Hb_001328_110--Hb_025526_090 Hb_000567_310 Hb_000567_310 Hb_001328_110--Hb_000567_310 Hb_003786_060 Hb_003786_060 Hb_006538_050--Hb_003786_060 Hb_006538_050--Hb_003052_070 Hb_006538_050--Hb_000567_310 Hb_006538_050--Hb_000617_340 Hb_000003_470--Hb_025526_090 Hb_000003_470--Hb_001328_110 Hb_016172_010 Hb_016172_010 Hb_000003_470--Hb_016172_010 Hb_011856_010 Hb_011856_010 Hb_000003_470--Hb_011856_010 Hb_000003_470--Hb_008705_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.389743 0.0345671 0.326651 0.0219001 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 3.19313 0

CAGE analysis