Hb_000120_440

Information

Type -
Description -
Location Contig120: 320618-321034
Sequence    

Annotation

kegg
ID rcu:RCOM_0612990
description hypothetical protein
nr
ID XP_002528523.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SRA4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0612990 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 004_P04.ab1: 320574-321250 , 019_D01.ab1: 320574-321230 , 044_E10.ab1: 320574-321235

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000120_440 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_009545_040 0.0520038408 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000021_090 0.0543234402 - - -
4 Hb_001165_040 0.0661869532 - - hypothetical protein POPTR_0009s10120g [Populus trichocarpa]
5 Hb_004037_010 0.0674954899 - - PREDICTED: uncharacterized protein LOC105632369 [Jatropha curcas]
6 Hb_000005_270 0.0683952169 - - Xyloglucan endotransglucosylase/hydrolase protein 2 precursor, putative [Ricinus communis]
7 Hb_000513_110 0.0853499646 - - PREDICTED: germin-like protein subfamily 1 member 13 [Populus euphratica]
8 Hb_025490_030 0.0870216553 - - PREDICTED: uncharacterized protein LOC105629177 [Jatropha curcas]
9 Hb_005356_010 0.0961833783 - - hypothetical protein POPTR_0003s16550g [Populus trichocarpa]
10 Hb_045992_010 0.1004544149 - - -
11 Hb_000462_100 0.1067068217 - - Leucoanthocyanidin dioxygenase, putative [Ricinus communis]
12 Hb_000120_710 0.10745281 - - unnamed protein product [Vitis vinifera]
13 Hb_002835_030 0.1094324609 - - PREDICTED: lysM domain receptor-like kinase 4 [Vitis vinifera]
14 Hb_010839_040 0.109678672 - - hypothetical protein JCGZ_20868 [Jatropha curcas]
15 Hb_000076_200 0.1105399541 - - conserved hypothetical protein [Ricinus communis]
16 Hb_007527_020 0.1108904451 - - PREDICTED: feruloyl CoA ortho-hydroxylase 1 [Jatropha curcas]
17 Hb_006153_190 0.1135174068 - - PREDICTED: 14 kDa proline-rich protein DC2.15-like [Gossypium raimondii]
18 Hb_007532_050 0.1135624074 - - 9-cis-epoxycarotenoid dioxygenase, putative [Ricinus communis]
19 Hb_005464_040 0.1139629784 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
20 Hb_166232_010 0.1140325152 - - hypothetical protein JCGZ_22831 [Jatropha curcas]

Gene co-expression network

sample Hb_000120_440 Hb_000120_440 Hb_009545_040 Hb_009545_040 Hb_000120_440--Hb_009545_040 Hb_000021_090 Hb_000021_090 Hb_000120_440--Hb_000021_090 Hb_001165_040 Hb_001165_040 Hb_000120_440--Hb_001165_040 Hb_004037_010 Hb_004037_010 Hb_000120_440--Hb_004037_010 Hb_000005_270 Hb_000005_270 Hb_000120_440--Hb_000005_270 Hb_000513_110 Hb_000513_110 Hb_000120_440--Hb_000513_110 Hb_009545_040--Hb_001165_040 Hb_009545_040--Hb_000021_090 Hb_009545_040--Hb_004037_010 Hb_025490_030 Hb_025490_030 Hb_009545_040--Hb_025490_030 Hb_006153_190 Hb_006153_190 Hb_009545_040--Hb_006153_190 Hb_000021_090--Hb_025490_030 Hb_000021_090--Hb_004037_010 Hb_124247_030 Hb_124247_030 Hb_000021_090--Hb_124247_030 Hb_000021_090--Hb_006153_190 Hb_002835_030 Hb_002835_030 Hb_001165_040--Hb_002835_030 Hb_000462_100 Hb_000462_100 Hb_001165_040--Hb_000462_100 Hb_010839_040 Hb_010839_040 Hb_001165_040--Hb_010839_040 Hb_001165_040--Hb_004037_010 Hb_004037_010--Hb_025490_030 Hb_000076_200 Hb_000076_200 Hb_004037_010--Hb_000076_200 Hb_000005_270--Hb_000513_110 Hb_045992_010 Hb_045992_010 Hb_000005_270--Hb_045992_010 Hb_000005_270--Hb_000021_090 Hb_000120_710 Hb_000120_710 Hb_000005_270--Hb_000120_710 Hb_000005_270--Hb_009545_040 Hb_000513_110--Hb_000120_710 Hb_003253_020 Hb_003253_020 Hb_000513_110--Hb_003253_020 Hb_000617_340 Hb_000617_340 Hb_000513_110--Hb_000617_340 Hb_001544_040 Hb_001544_040 Hb_000513_110--Hb_001544_040 Hb_007527_020 Hb_007527_020 Hb_000513_110--Hb_007527_020 Hb_001901_090 Hb_001901_090 Hb_000513_110--Hb_001901_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.383093 0.0654674 0.944274 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 10.7065 0

CAGE analysis