Hb_006153_190

Information

Type -
Description -
Location Contig6153: 197854-198243
Sequence    

Annotation

kegg
ID tcc:TCM_016003
description 14 kDa proline-rich protein DC2.15, putative
nr
ID XP_012475941.1
description PREDICTED: 14 kDa proline-rich protein DC2.15-like [Gossypium raimondii]
swissprot
ID Q39176
description Lipid transfer protein EARLI 1 OS=Arabidopsis thaliana GN=EARLI1 PE=1 SV=1
trembl
ID A0A0D2QW64
description Gossypium raimondii chromosome 4, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_004G199900 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006153_190 0.0 - - PREDICTED: 14 kDa proline-rich protein DC2.15-like [Gossypium raimondii]
2 Hb_000720_010 0.0797292032 - - Lignin-forming anionic peroxidase precursor, putative [Ricinus communis]
3 Hb_009545_040 0.0813783742 - - conserved hypothetical protein [Ricinus communis]
4 Hb_011161_060 0.0841588395 transcription factor TF Family: GRAS PREDICTED: nodulation-signaling pathway 2 protein [Jatropha curcas]
5 Hb_000671_010 0.0852292131 - - PREDICTED: 7-deoxyloganetin glucosyltransferase-like [Jatropha curcas]
6 Hb_001213_010 0.0854046369 - - PREDICTED: laccase-7 [Jatropha curcas]
7 Hb_126535_010 0.0860084554 - - hypothetical protein JCGZ_09554 [Jatropha curcas]
8 Hb_124247_030 0.0864369221 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase PREDICTED: probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic [Jatropha curcas]
9 Hb_000021_090 0.0874771735 - - -
10 Hb_054102_010 0.087636994 - - abhydrolase domain containing, putative [Ricinus communis]
11 Hb_002757_050 0.0899673791 - - PREDICTED: O-acyltransferase WSD1-like isoform X1 [Populus euphratica]
12 Hb_002521_010 0.0926514578 - - cinnamate 4-hydroxylase, putative [Ricinus communis]
13 Hb_148383_010 0.0936439733 - - PREDICTED: protein YLS9 [Jatropha curcas]
14 Hb_000205_290 0.0983033069 - - -
15 Hb_028008_010 0.0991013179 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 23 [Jatropha curcas]
16 Hb_000576_080 0.1001762183 - - conserved hypothetical protein [Ricinus communis]
17 Hb_175167_020 0.1020713906 - - conserved hypothetical protein [Ricinus communis]
18 Hb_004037_010 0.1037777586 - - PREDICTED: uncharacterized protein LOC105632369 [Jatropha curcas]
19 Hb_025490_030 0.1037971309 - - PREDICTED: uncharacterized protein LOC105629177 [Jatropha curcas]
20 Hb_000200_180 0.1099011554 - - -

Gene co-expression network

sample Hb_006153_190 Hb_006153_190 Hb_000720_010 Hb_000720_010 Hb_006153_190--Hb_000720_010 Hb_009545_040 Hb_009545_040 Hb_006153_190--Hb_009545_040 Hb_011161_060 Hb_011161_060 Hb_006153_190--Hb_011161_060 Hb_000671_010 Hb_000671_010 Hb_006153_190--Hb_000671_010 Hb_001213_010 Hb_001213_010 Hb_006153_190--Hb_001213_010 Hb_126535_010 Hb_126535_010 Hb_006153_190--Hb_126535_010 Hb_000720_010--Hb_011161_060 Hb_000720_010--Hb_001213_010 Hb_000720_010--Hb_000671_010 Hb_054102_010 Hb_054102_010 Hb_000720_010--Hb_054102_010 Hb_002757_050 Hb_002757_050 Hb_000720_010--Hb_002757_050 Hb_148383_010 Hb_148383_010 Hb_000720_010--Hb_148383_010 Hb_000120_440 Hb_000120_440 Hb_009545_040--Hb_000120_440 Hb_001165_040 Hb_001165_040 Hb_009545_040--Hb_001165_040 Hb_000021_090 Hb_000021_090 Hb_009545_040--Hb_000021_090 Hb_004037_010 Hb_004037_010 Hb_009545_040--Hb_004037_010 Hb_025490_030 Hb_025490_030 Hb_009545_040--Hb_025490_030 Hb_011161_060--Hb_000671_010 Hb_011161_060--Hb_002757_050 Hb_000205_290 Hb_000205_290 Hb_011161_060--Hb_000205_290 Hb_011161_060--Hb_001213_010 Hb_000948_040 Hb_000948_040 Hb_011161_060--Hb_000948_040 Hb_000671_010--Hb_002757_050 Hb_000671_010--Hb_000205_290 Hb_000671_010--Hb_000948_040 Hb_000671_010--Hb_001213_010 Hb_001213_010--Hb_054102_010 Hb_001213_010--Hb_148383_010 Hb_000576_080 Hb_000576_080 Hb_001213_010--Hb_000576_080 Hb_177880_010 Hb_177880_010 Hb_126535_010--Hb_177880_010 Hb_175167_020 Hb_175167_020 Hb_126535_010--Hb_175167_020 Hb_004834_020 Hb_004834_020 Hb_126535_010--Hb_004834_020 Hb_124247_030 Hb_124247_030 Hb_126535_010--Hb_124247_030 Hb_007320_040 Hb_007320_040 Hb_126535_010--Hb_007320_040 Hb_126535_010--Hb_011161_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.63867 1.65367 58.1516 0.0893388 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.20931 1.1509 0 412.208 0.286443

CAGE analysis