Hb_177880_010

Information

Type -
Description -
Location Contig177880: 2892-3889
Sequence    

Annotation

kegg
ID cit:102628914
description probable leucine-rich repeat receptor-like protein kinase At1g35710-like
nr
ID XP_012068364.1
description PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
swissprot
ID Q8VZG8
description Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=2 SV=3
trembl
ID A0A067KYY7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15779 PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable lrr receptor-like serine threonine-protein kinase at4g08850-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_177880_010 0.0 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
2 Hb_007320_040 0.0295790369 - - PREDICTED: U-box domain-containing protein 26-like [Jatropha curcas]
3 Hb_004834_020 0.0440181533 - - major allergen Pru ar 1-like [Jatropha curcas]
4 Hb_126535_010 0.0467088405 - - hypothetical protein JCGZ_09554 [Jatropha curcas]
5 Hb_124247_030 0.0627711748 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase PREDICTED: probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic [Jatropha curcas]
6 Hb_175167_020 0.08132509 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002966_030 0.081639464 - - conserved hypothetical protein [Ricinus communis]
8 Hb_012532_020 0.1008104321 - - Isoflavone reductase, putative [Ricinus communis]
9 Hb_000021_090 0.1011110766 - - -
10 Hb_153457_010 0.102536796 - - Miraculin precursor, putative [Ricinus communis]
11 Hb_002747_010 0.1033283748 - - PREDICTED: alcohol dehydrogenase-like 1 [Jatropha curcas]
12 Hb_025490_030 0.1034187869 - - PREDICTED: uncharacterized protein LOC105629177 [Jatropha curcas]
13 Hb_007897_040 0.1037408131 - - ATP binding protein, putative [Ricinus communis]
14 Hb_028008_010 0.1052806078 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 23 [Jatropha curcas]
15 Hb_185391_010 0.1086879372 - - PREDICTED: metalloendoproteinase 1-like [Populus euphratica]
16 Hb_005614_040 0.1104023542 - - unnamed protein product [Coffea canephora]
17 Hb_002757_050 0.1163926795 - - PREDICTED: O-acyltransferase WSD1-like isoform X1 [Populus euphratica]
18 Hb_000958_180 0.1170126363 - - hypothetical protein CISIN_1g043061mg, partial [Citrus sinensis]
19 Hb_000671_010 0.1171437724 - - PREDICTED: 7-deoxyloganetin glucosyltransferase-like [Jatropha curcas]
20 Hb_000205_290 0.1172152599 - - -

Gene co-expression network

sample Hb_177880_010 Hb_177880_010 Hb_007320_040 Hb_007320_040 Hb_177880_010--Hb_007320_040 Hb_004834_020 Hb_004834_020 Hb_177880_010--Hb_004834_020 Hb_126535_010 Hb_126535_010 Hb_177880_010--Hb_126535_010 Hb_124247_030 Hb_124247_030 Hb_177880_010--Hb_124247_030 Hb_175167_020 Hb_175167_020 Hb_177880_010--Hb_175167_020 Hb_002966_030 Hb_002966_030 Hb_177880_010--Hb_002966_030 Hb_007320_040--Hb_004834_020 Hb_007320_040--Hb_002966_030 Hb_007320_040--Hb_126535_010 Hb_007320_040--Hb_124247_030 Hb_002747_010 Hb_002747_010 Hb_007320_040--Hb_002747_010 Hb_004834_020--Hb_126535_010 Hb_004834_020--Hb_124247_030 Hb_004834_020--Hb_175167_020 Hb_004834_020--Hb_002966_030 Hb_126535_010--Hb_175167_020 Hb_126535_010--Hb_124247_030 Hb_011161_060 Hb_011161_060 Hb_126535_010--Hb_011161_060 Hb_025490_030 Hb_025490_030 Hb_124247_030--Hb_025490_030 Hb_000021_090 Hb_000021_090 Hb_124247_030--Hb_000021_090 Hb_153457_010 Hb_153457_010 Hb_175167_020--Hb_153457_010 Hb_000513_100 Hb_000513_100 Hb_175167_020--Hb_000513_100 Hb_175167_020--Hb_002966_030 Hb_175167_020--Hb_002747_010 Hb_028008_010 Hb_028008_010 Hb_175167_020--Hb_028008_010 Hb_002966_030--Hb_002747_010 Hb_002966_030--Hb_153457_010 Hb_012779_010 Hb_012779_010 Hb_002966_030--Hb_012779_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0185128 0.0616614 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.609966 0

CAGE analysis