Hb_000513_100

Information

Type -
Description -
Location Contig513: 107099-107946
Sequence    

Annotation

kegg
ID pop:POPTR_0004s18690g
description POPTRDRAFT_1077107; hypothetical protein
nr
ID AAX84674.1
description germin-like protein GLP, partial [Manihot esculenta]
swissprot
ID Q9FMA6
description Putative germin-like protein subfamily 1 member 12 OS=Arabidopsis thaliana GN=At5g38960 PE=3 SV=1
trembl
ID Q52QX7
description Germin-like protein GLP (Fragment) OS=Manihot esculenta PE=2 SV=1
Gene Ontology
ID GO:0005576
description germin-like protein subfamily 1 member 13

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46393: 106814-126179 , PASA_asmbl_46394: 107117-107907
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000513_100 0.0 - - germin-like protein GLP, partial [Manihot esculenta]
2 Hb_028008_010 0.059757564 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 23 [Jatropha curcas]
3 Hb_012779_010 0.0625993076 - - hypothetical protein JCGZ_05865 [Jatropha curcas]
4 Hb_153457_010 0.0638034498 - - Miraculin precursor, putative [Ricinus communis]
5 Hb_175167_020 0.0666920899 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001189_030 0.0832765579 - - hypothetical protein RCOM_1341480 [Ricinus communis]
7 Hb_002747_010 0.0837628455 - - PREDICTED: alcohol dehydrogenase-like 1 [Jatropha curcas]
8 Hb_002966_030 0.0969072853 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002521_010 0.1015737098 - - cinnamate 4-hydroxylase, putative [Ricinus communis]
10 Hb_126535_010 0.112404913 - - hypothetical protein JCGZ_09554 [Jatropha curcas]
11 Hb_000576_080 0.1184011301 - - conserved hypothetical protein [Ricinus communis]
12 Hb_006153_190 0.120691884 - - PREDICTED: 14 kDa proline-rich protein DC2.15-like [Gossypium raimondii]
13 Hb_148383_010 0.1212323763 - - PREDICTED: protein YLS9 [Jatropha curcas]
14 Hb_001901_040 0.1219620293 - - hypothetical protein CARUB_v10027638mg [Capsella rubella]
15 Hb_000115_180 0.1232415459 - - hypothetical protein RCOM_1308310 [Ricinus communis]
16 Hb_001863_050 0.1244286236 - - PREDICTED: wall-associated receptor kinase-like 8 [Jatropha curcas]
17 Hb_000297_180 0.1250918784 - - Desacetoxyvindoline 4-hydroxylase, putative [Ricinus communis]
18 Hb_054102_010 0.1255100698 - - abhydrolase domain containing, putative [Ricinus communis]
19 Hb_006142_010 0.1268169803 - - hypothetical protein CICLE_v10013815mg, partial [Citrus clementina]
20 Hb_001213_010 0.1278113598 - - PREDICTED: laccase-7 [Jatropha curcas]

Gene co-expression network

sample Hb_000513_100 Hb_000513_100 Hb_028008_010 Hb_028008_010 Hb_000513_100--Hb_028008_010 Hb_012779_010 Hb_012779_010 Hb_000513_100--Hb_012779_010 Hb_153457_010 Hb_153457_010 Hb_000513_100--Hb_153457_010 Hb_175167_020 Hb_175167_020 Hb_000513_100--Hb_175167_020 Hb_001189_030 Hb_001189_030 Hb_000513_100--Hb_001189_030 Hb_002747_010 Hb_002747_010 Hb_000513_100--Hb_002747_010 Hb_028008_010--Hb_175167_020 Hb_002521_010 Hb_002521_010 Hb_028008_010--Hb_002521_010 Hb_028008_010--Hb_153457_010 Hb_000021_090 Hb_000021_090 Hb_028008_010--Hb_000021_090 Hb_002966_030 Hb_002966_030 Hb_028008_010--Hb_002966_030 Hb_012779_010--Hb_153457_010 Hb_012779_010--Hb_002747_010 Hb_012779_010--Hb_002966_030 Hb_012779_010--Hb_175167_020 Hb_012779_010--Hb_028008_010 Hb_153457_010--Hb_002747_010 Hb_153457_010--Hb_002966_030 Hb_153457_010--Hb_175167_020 Hb_126535_010 Hb_126535_010 Hb_175167_020--Hb_126535_010 Hb_175167_020--Hb_002966_030 Hb_175167_020--Hb_002747_010 Hb_001189_030--Hb_012779_010 Hb_001901_040 Hb_001901_040 Hb_001189_030--Hb_001901_040 Hb_001189_030--Hb_028008_010 Hb_001189_030--Hb_153457_010 Hb_001189_030--Hb_175167_020 Hb_002747_010--Hb_002966_030 Hb_007320_040 Hb_007320_040 Hb_002747_010--Hb_007320_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.145648 0.789804 6.70781 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 27.4492 0

CAGE analysis