Hb_001189_030

Information

Type -
Description -
Location Contig1189: 37531-37767
Sequence    

Annotation

kegg
ID rcu:RCOM_1341480
description hypothetical protein
nr
ID XP_002515126.1
description hypothetical protein RCOM_1341480 [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RMY7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1341480 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001189_030 0.0 - - hypothetical protein RCOM_1341480 [Ricinus communis]
2 Hb_000513_100 0.0832765579 - - germin-like protein GLP, partial [Manihot esculenta]
3 Hb_012779_010 0.10843079 - - hypothetical protein JCGZ_05865 [Jatropha curcas]
4 Hb_001901_040 0.1128748819 - - hypothetical protein CARUB_v10027638mg [Capsella rubella]
5 Hb_028008_010 0.118082793 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 23 [Jatropha curcas]
6 Hb_153457_010 0.1213553499 - - Miraculin precursor, putative [Ricinus communis]
7 Hb_175167_020 0.1273357846 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000115_180 0.1342190081 - - hypothetical protein RCOM_1308310 [Ricinus communis]
9 Hb_001863_050 0.1342320662 - - PREDICTED: wall-associated receptor kinase-like 8 [Jatropha curcas]
10 Hb_006142_010 0.1344793032 - - hypothetical protein CICLE_v10013815mg, partial [Citrus clementina]
11 Hb_002747_010 0.1368969464 - - PREDICTED: alcohol dehydrogenase-like 1 [Jatropha curcas]
12 Hb_002231_140 0.1374966389 - - PREDICTED: uncharacterized protein LOC105634453 [Jatropha curcas]
13 Hb_000028_540 0.1379710388 - - hypothetical protein POPTR_0012s03720g [Populus trichocarpa]
14 Hb_156683_010 0.1384362567 - - PREDICTED: uncharacterized protein At5g65660-like [Jatropha curcas]
15 Hb_002521_010 0.1400209746 - - cinnamate 4-hydroxylase, putative [Ricinus communis]
16 Hb_012355_010 0.1437168415 - - PREDICTED: probable protein Pop3 [Jatropha curcas]
17 Hb_002475_070 0.1481528064 - - hypothetical protein POPTR_0017s02440g, partial [Populus trichocarpa]
18 Hb_176232_040 0.1489337898 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000576_080 0.1496856594 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000614_180 0.1498745044 - - -

Gene co-expression network

sample Hb_001189_030 Hb_001189_030 Hb_000513_100 Hb_000513_100 Hb_001189_030--Hb_000513_100 Hb_012779_010 Hb_012779_010 Hb_001189_030--Hb_012779_010 Hb_001901_040 Hb_001901_040 Hb_001189_030--Hb_001901_040 Hb_028008_010 Hb_028008_010 Hb_001189_030--Hb_028008_010 Hb_153457_010 Hb_153457_010 Hb_001189_030--Hb_153457_010 Hb_175167_020 Hb_175167_020 Hb_001189_030--Hb_175167_020 Hb_000513_100--Hb_028008_010 Hb_000513_100--Hb_012779_010 Hb_000513_100--Hb_153457_010 Hb_000513_100--Hb_175167_020 Hb_002747_010 Hb_002747_010 Hb_000513_100--Hb_002747_010 Hb_012779_010--Hb_153457_010 Hb_012779_010--Hb_002747_010 Hb_002966_030 Hb_002966_030 Hb_012779_010--Hb_002966_030 Hb_012779_010--Hb_175167_020 Hb_012779_010--Hb_028008_010 Hb_000115_180 Hb_000115_180 Hb_001901_040--Hb_000115_180 Hb_000576_080 Hb_000576_080 Hb_001901_040--Hb_000576_080 Hb_001863_050 Hb_001863_050 Hb_001901_040--Hb_001863_050 Hb_006142_010 Hb_006142_010 Hb_001901_040--Hb_006142_010 Hb_148383_010 Hb_148383_010 Hb_001901_040--Hb_148383_010 Hb_028008_010--Hb_175167_020 Hb_002521_010 Hb_002521_010 Hb_028008_010--Hb_002521_010 Hb_028008_010--Hb_153457_010 Hb_000021_090 Hb_000021_090 Hb_028008_010--Hb_000021_090 Hb_028008_010--Hb_002966_030 Hb_153457_010--Hb_002747_010 Hb_153457_010--Hb_002966_030 Hb_153457_010--Hb_175167_020 Hb_126535_010 Hb_126535_010 Hb_175167_020--Hb_126535_010 Hb_175167_020--Hb_002966_030 Hb_175167_020--Hb_002747_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.384685 1.18693 13.9933 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.594679 0 44.7559 0

CAGE analysis