Hb_001901_040

Information

Type -
Description -
Location Contig1901: 40662-42419
Sequence    

Annotation

kegg
ID crb:CARUB_v10027638mg
description hypothetical protein
nr
ID XP_006281537.1
description hypothetical protein CARUB_v10027638mg [Capsella rubella]
swissprot
ID -
description -
trembl
ID R0GQ04
description Uncharacterized protein OS=Capsella rubella GN=CARUB_v10027638mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001901_040 0.0 - - hypothetical protein CARUB_v10027638mg [Capsella rubella]
2 Hb_000115_180 0.1061576085 - - hypothetical protein RCOM_1308310 [Ricinus communis]
3 Hb_000576_080 0.1066269155 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001863_050 0.1072303237 - - PREDICTED: wall-associated receptor kinase-like 8 [Jatropha curcas]
5 Hb_006142_010 0.1094492738 - - hypothetical protein CICLE_v10013815mg, partial [Citrus clementina]
6 Hb_148383_010 0.1107894861 - - PREDICTED: protein YLS9 [Jatropha curcas]
7 Hb_001189_030 0.1128748819 - - hypothetical protein RCOM_1341480 [Ricinus communis]
8 Hb_054102_010 0.1165324625 - - abhydrolase domain containing, putative [Ricinus communis]
9 Hb_002231_140 0.1192726255 - - PREDICTED: uncharacterized protein LOC105634453 [Jatropha curcas]
10 Hb_001213_010 0.1194814861 - - PREDICTED: laccase-7 [Jatropha curcas]
11 Hb_000028_540 0.1204054199 - - hypothetical protein POPTR_0012s03720g [Populus trichocarpa]
12 Hb_156683_010 0.1214746692 - - PREDICTED: uncharacterized protein At5g65660-like [Jatropha curcas]
13 Hb_000513_100 0.1219620293 - - germin-like protein GLP, partial [Manihot esculenta]
14 Hb_006153_190 0.1237377064 - - PREDICTED: 14 kDa proline-rich protein DC2.15-like [Gossypium raimondii]
15 Hb_012355_010 0.1319484745 - - PREDICTED: probable protein Pop3 [Jatropha curcas]
16 Hb_175167_020 0.1343287704 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000720_010 0.1375528796 - - Lignin-forming anionic peroxidase precursor, putative [Ricinus communis]
18 Hb_176232_040 0.1407668226 - - conserved hypothetical protein [Ricinus communis]
19 Hb_028008_010 0.1442233729 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 23 [Jatropha curcas]
20 Hb_002521_010 0.1453227072 - - cinnamate 4-hydroxylase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001901_040 Hb_001901_040 Hb_000115_180 Hb_000115_180 Hb_001901_040--Hb_000115_180 Hb_000576_080 Hb_000576_080 Hb_001901_040--Hb_000576_080 Hb_001863_050 Hb_001863_050 Hb_001901_040--Hb_001863_050 Hb_006142_010 Hb_006142_010 Hb_001901_040--Hb_006142_010 Hb_148383_010 Hb_148383_010 Hb_001901_040--Hb_148383_010 Hb_001189_030 Hb_001189_030 Hb_001901_040--Hb_001189_030 Hb_000115_180--Hb_001863_050 Hb_000115_180--Hb_006142_010 Hb_002231_140 Hb_002231_140 Hb_000115_180--Hb_002231_140 Hb_000028_540 Hb_000028_540 Hb_000115_180--Hb_000028_540 Hb_156683_010 Hb_156683_010 Hb_000115_180--Hb_156683_010 Hb_012355_010 Hb_012355_010 Hb_000115_180--Hb_012355_010 Hb_000576_080--Hb_148383_010 Hb_054102_010 Hb_054102_010 Hb_000576_080--Hb_054102_010 Hb_001213_010 Hb_001213_010 Hb_000576_080--Hb_001213_010 Hb_000720_010 Hb_000720_010 Hb_000576_080--Hb_000720_010 Hb_000576_080--Hb_000115_180 Hb_000576_080--Hb_001863_050 Hb_001863_050--Hb_006142_010 Hb_001863_050--Hb_002231_140 Hb_001863_050--Hb_000028_540 Hb_001863_050--Hb_156683_010 Hb_001863_050--Hb_012355_010 Hb_006142_010--Hb_002231_140 Hb_006142_010--Hb_000028_540 Hb_006142_010--Hb_156683_010 Hb_006142_010--Hb_012355_010 Hb_148383_010--Hb_054102_010 Hb_148383_010--Hb_001213_010 Hb_148383_010--Hb_000720_010 Hb_011161_060 Hb_011161_060 Hb_148383_010--Hb_011161_060 Hb_148383_010--Hb_000115_180 Hb_000513_100 Hb_000513_100 Hb_001189_030--Hb_000513_100 Hb_012779_010 Hb_012779_010 Hb_001189_030--Hb_012779_010 Hb_028008_010 Hb_028008_010 Hb_001189_030--Hb_028008_010 Hb_153457_010 Hb_153457_010 Hb_001189_030--Hb_153457_010 Hb_175167_020 Hb_175167_020 Hb_001189_030--Hb_175167_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0239896 0.0215491 1.89211 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0517775 0.0938177 7.30955 0

CAGE analysis