Hb_153457_010

Information

Type -
Description -
Location Contig153457: 317-778
Sequence    

Annotation

kegg
ID rcu:RCOM_0538690
description Miraculin precursor, putative
nr
ID XP_002525872.1
description Miraculin precursor, putative [Ricinus communis]
swissprot
ID P29421
description Alpha-amylase/subtilisin inhibitor OS=Oryza sativa subsp. japonica GN=RASI PE=1 SV=2
trembl
ID B9SIQ3
description Miraculin, putative OS=Ricinus communis GN=RCOM_0538690 PE=4 SV=1
Gene Ontology
ID GO:0004866
description alpha-amylase subtilisin inhibitor-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13202: 401-1014
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_153457_010 0.0 - - Miraculin precursor, putative [Ricinus communis]
2 Hb_002747_010 0.0266833588 - - PREDICTED: alcohol dehydrogenase-like 1 [Jatropha curcas]
3 Hb_012779_010 0.0350545603 - - hypothetical protein JCGZ_05865 [Jatropha curcas]
4 Hb_002966_030 0.042160042 - - conserved hypothetical protein [Ricinus communis]
5 Hb_175167_020 0.0493177929 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000513_100 0.0638034498 - - germin-like protein GLP, partial [Manihot esculenta]
7 Hb_028008_010 0.0823804838 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 23 [Jatropha curcas]
8 Hb_126535_010 0.0954805506 - - hypothetical protein JCGZ_09554 [Jatropha curcas]
9 Hb_007320_040 0.0980390021 - - PREDICTED: U-box domain-containing protein 26-like [Jatropha curcas]
10 Hb_177880_010 0.102536796 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
11 Hb_004834_020 0.1054711172 - - major allergen Pru ar 1-like [Jatropha curcas]
12 Hb_124625_010 0.1186746284 - - hypothetical protein JCGZ_01142 [Jatropha curcas]
13 Hb_001189_030 0.1213553499 - - hypothetical protein RCOM_1341480 [Ricinus communis]
14 Hb_007897_040 0.1235780524 - - ATP binding protein, putative [Ricinus communis]
15 Hb_002521_010 0.1251084507 - - cinnamate 4-hydroxylase, putative [Ricinus communis]
16 Hb_000297_180 0.1258164851 - - Desacetoxyvindoline 4-hydroxylase, putative [Ricinus communis]
17 Hb_005396_010 0.1259459274 - - PREDICTED: interleukin enhancer-binding factor 3-B-like [Jatropha curcas]
18 Hb_001053_010 0.1288869584 - - PREDICTED: polygalacturonase-like [Jatropha curcas]
19 Hb_050898_020 0.1310629408 - - hypothetical protein JCGZ_19965 [Jatropha curcas]
20 Hb_124247_030 0.1324438217 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase PREDICTED: probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_153457_010 Hb_153457_010 Hb_002747_010 Hb_002747_010 Hb_153457_010--Hb_002747_010 Hb_012779_010 Hb_012779_010 Hb_153457_010--Hb_012779_010 Hb_002966_030 Hb_002966_030 Hb_153457_010--Hb_002966_030 Hb_175167_020 Hb_175167_020 Hb_153457_010--Hb_175167_020 Hb_000513_100 Hb_000513_100 Hb_153457_010--Hb_000513_100 Hb_028008_010 Hb_028008_010 Hb_153457_010--Hb_028008_010 Hb_002747_010--Hb_002966_030 Hb_002747_010--Hb_012779_010 Hb_002747_010--Hb_175167_020 Hb_002747_010--Hb_000513_100 Hb_007320_040 Hb_007320_040 Hb_002747_010--Hb_007320_040 Hb_012779_010--Hb_000513_100 Hb_012779_010--Hb_002966_030 Hb_012779_010--Hb_175167_020 Hb_012779_010--Hb_028008_010 Hb_002966_030--Hb_007320_040 Hb_002966_030--Hb_175167_020 Hb_177880_010 Hb_177880_010 Hb_002966_030--Hb_177880_010 Hb_126535_010 Hb_126535_010 Hb_175167_020--Hb_126535_010 Hb_175167_020--Hb_000513_100 Hb_175167_020--Hb_028008_010 Hb_000513_100--Hb_028008_010 Hb_001189_030 Hb_001189_030 Hb_000513_100--Hb_001189_030 Hb_002521_010 Hb_002521_010 Hb_028008_010--Hb_002521_010 Hb_000021_090 Hb_000021_090 Hb_028008_010--Hb_000021_090 Hb_028008_010--Hb_002966_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.512046 2.2943 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 11.056 0

CAGE analysis