Hb_002521_010

Information

Type -
Description -
Location Contig2521: 46082-48132
Sequence    

Annotation

kegg
ID rcu:RCOM_2017220
description cinnamate 4-hydroxylase, putative (EC:1.14.13.11)
nr
ID XP_002534996.1
description cinnamate 4-hydroxylase, putative [Ricinus communis]
swissprot
ID H2DH22
description Cytochrome P450 CYP73A100 OS=Panax ginseng PE=2 SV=1
trembl
ID B9T9S7
description Cinnamate 4-hydroxylase, putative OS=Ricinus communis GN=RCOM_2017220 PE=3 SV=1
Gene Ontology
ID GO:0005506
description cytochrome p450 cyp73a100-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26379: 46360-46519 , PASA_asmbl_26380: 46653-46942
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002521_010 0.0 - - cinnamate 4-hydroxylase, putative [Ricinus communis]
2 Hb_028008_010 0.0745963452 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 23 [Jatropha curcas]
3 Hb_000200_180 0.090461528 - - -
4 Hb_006153_190 0.0926514578 - - PREDICTED: 14 kDa proline-rich protein DC2.15-like [Gossypium raimondii]
5 Hb_000021_090 0.0998254034 - - -
6 Hb_144783_010 0.1009211109 - - glutathione s-transferase, putative [Ricinus communis]
7 Hb_000513_100 0.1015737098 - - germin-like protein GLP, partial [Manihot esculenta]
8 Hb_124247_030 0.1046637354 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase PREDICTED: probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic [Jatropha curcas]
9 Hb_175167_020 0.1082777077 - - conserved hypothetical protein [Ricinus communis]
10 Hb_004037_010 0.1103785301 - - PREDICTED: uncharacterized protein LOC105632369 [Jatropha curcas]
11 Hb_126535_010 0.1150576284 - - hypothetical protein JCGZ_09554 [Jatropha curcas]
12 Hb_000005_270 0.1157352886 - - Xyloglucan endotransglucosylase/hydrolase protein 2 precursor, putative [Ricinus communis]
13 Hb_007532_050 0.1179638737 - - 9-cis-epoxycarotenoid dioxygenase, putative [Ricinus communis]
14 Hb_000076_200 0.1194816645 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000161_250 0.1205877541 transcription factor TF Family: Tify conserved hypothetical protein [Ricinus communis]
16 Hb_009545_040 0.1227907381 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002475_070 0.1231313865 - - hypothetical protein POPTR_0017s02440g, partial [Populus trichocarpa]
18 Hb_000297_180 0.1237310536 - - Desacetoxyvindoline 4-hydroxylase, putative [Ricinus communis]
19 Hb_153457_010 0.1251084507 - - Miraculin precursor, putative [Ricinus communis]
20 Hb_000347_530 0.1259071211 transcription factor TF Family: MYB PREDICTED: transcription factor MYB114-like [Jatropha curcas]

Gene co-expression network

sample Hb_002521_010 Hb_002521_010 Hb_028008_010 Hb_028008_010 Hb_002521_010--Hb_028008_010 Hb_000200_180 Hb_000200_180 Hb_002521_010--Hb_000200_180 Hb_006153_190 Hb_006153_190 Hb_002521_010--Hb_006153_190 Hb_000021_090 Hb_000021_090 Hb_002521_010--Hb_000021_090 Hb_144783_010 Hb_144783_010 Hb_002521_010--Hb_144783_010 Hb_000513_100 Hb_000513_100 Hb_002521_010--Hb_000513_100 Hb_028008_010--Hb_000513_100 Hb_175167_020 Hb_175167_020 Hb_028008_010--Hb_175167_020 Hb_153457_010 Hb_153457_010 Hb_028008_010--Hb_153457_010 Hb_028008_010--Hb_000021_090 Hb_002966_030 Hb_002966_030 Hb_028008_010--Hb_002966_030 Hb_124247_030 Hb_124247_030 Hb_000200_180--Hb_124247_030 Hb_000200_180--Hb_144783_010 Hb_000200_180--Hb_006153_190 Hb_004037_010 Hb_004037_010 Hb_000200_180--Hb_004037_010 Hb_126535_010 Hb_126535_010 Hb_000200_180--Hb_126535_010 Hb_000720_010 Hb_000720_010 Hb_006153_190--Hb_000720_010 Hb_009545_040 Hb_009545_040 Hb_006153_190--Hb_009545_040 Hb_011161_060 Hb_011161_060 Hb_006153_190--Hb_011161_060 Hb_000671_010 Hb_000671_010 Hb_006153_190--Hb_000671_010 Hb_001213_010 Hb_001213_010 Hb_006153_190--Hb_001213_010 Hb_006153_190--Hb_126535_010 Hb_000120_440 Hb_000120_440 Hb_000021_090--Hb_000120_440 Hb_000021_090--Hb_009545_040 Hb_025490_030 Hb_025490_030 Hb_000021_090--Hb_025490_030 Hb_000021_090--Hb_004037_010 Hb_000021_090--Hb_124247_030 Hb_000021_090--Hb_006153_190 Hb_002475_070 Hb_002475_070 Hb_144783_010--Hb_002475_070 Hb_004316_130 Hb_004316_130 Hb_144783_010--Hb_004316_130 Hb_000297_180 Hb_000297_180 Hb_144783_010--Hb_000297_180 Hb_003893_100 Hb_003893_100 Hb_144783_010--Hb_003893_100 Hb_012779_010 Hb_012779_010 Hb_000513_100--Hb_012779_010 Hb_000513_100--Hb_153457_010 Hb_000513_100--Hb_175167_020 Hb_001189_030 Hb_001189_030 Hb_000513_100--Hb_001189_030 Hb_002747_010 Hb_002747_010 Hb_000513_100--Hb_002747_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.9853 3.40529 31.0686 0.0113117 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.154132 0.0606351 0.152798 183.29 1.70234

CAGE analysis