Hb_000021_090

Information

Type -
Description -
Location Contig21: 260728-261186
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000021_090 0.0 - - -
2 Hb_000120_440 0.0543234402 - - conserved hypothetical protein [Ricinus communis]
3 Hb_009545_040 0.0589874843 - - conserved hypothetical protein [Ricinus communis]
4 Hb_025490_030 0.0658554333 - - PREDICTED: uncharacterized protein LOC105629177 [Jatropha curcas]
5 Hb_004037_010 0.0677789949 - - PREDICTED: uncharacterized protein LOC105632369 [Jatropha curcas]
6 Hb_124247_030 0.0781351725 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase PREDICTED: probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic [Jatropha curcas]
7 Hb_006153_190 0.0874771735 - - PREDICTED: 14 kDa proline-rich protein DC2.15-like [Gossypium raimondii]
8 Hb_000005_270 0.0887579573 - - Xyloglucan endotransglucosylase/hydrolase protein 2 precursor, putative [Ricinus communis]
9 Hb_028008_010 0.0896947433 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 23 [Jatropha curcas]
10 Hb_001165_040 0.0929762167 - - hypothetical protein POPTR_0009s10120g [Populus trichocarpa]
11 Hb_000513_110 0.0931261025 - - PREDICTED: germin-like protein subfamily 1 member 13 [Populus euphratica]
12 Hb_126535_010 0.0953049521 - - hypothetical protein JCGZ_09554 [Jatropha curcas]
13 Hb_002521_010 0.0998254034 - - cinnamate 4-hydroxylase, putative [Ricinus communis]
14 Hb_177880_010 0.1011110766 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
15 Hb_007532_050 0.1012281301 - - 9-cis-epoxycarotenoid dioxygenase, putative [Ricinus communis]
16 Hb_005614_040 0.1047745655 - - unnamed protein product [Coffea canephora]
17 Hb_004834_020 0.1069694447 - - major allergen Pru ar 1-like [Jatropha curcas]
18 Hb_007527_020 0.1166214425 - - PREDICTED: feruloyl CoA ortho-hydroxylase 1 [Jatropha curcas]
19 Hb_007320_040 0.1169175275 - - PREDICTED: U-box domain-containing protein 26-like [Jatropha curcas]
20 Hb_000059_100 0.1175092596 - - Basic blue protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000021_090 Hb_000021_090 Hb_000120_440 Hb_000120_440 Hb_000021_090--Hb_000120_440 Hb_009545_040 Hb_009545_040 Hb_000021_090--Hb_009545_040 Hb_025490_030 Hb_025490_030 Hb_000021_090--Hb_025490_030 Hb_004037_010 Hb_004037_010 Hb_000021_090--Hb_004037_010 Hb_124247_030 Hb_124247_030 Hb_000021_090--Hb_124247_030 Hb_006153_190 Hb_006153_190 Hb_000021_090--Hb_006153_190 Hb_000120_440--Hb_009545_040 Hb_001165_040 Hb_001165_040 Hb_000120_440--Hb_001165_040 Hb_000120_440--Hb_004037_010 Hb_000005_270 Hb_000005_270 Hb_000120_440--Hb_000005_270 Hb_000513_110 Hb_000513_110 Hb_000120_440--Hb_000513_110 Hb_009545_040--Hb_001165_040 Hb_009545_040--Hb_004037_010 Hb_009545_040--Hb_025490_030 Hb_009545_040--Hb_006153_190 Hb_025490_030--Hb_124247_030 Hb_025490_030--Hb_004037_010 Hb_025490_030--Hb_001165_040 Hb_005066_010 Hb_005066_010 Hb_025490_030--Hb_005066_010 Hb_004037_010--Hb_001165_040 Hb_000076_200 Hb_000076_200 Hb_004037_010--Hb_000076_200 Hb_126535_010 Hb_126535_010 Hb_124247_030--Hb_126535_010 Hb_177880_010 Hb_177880_010 Hb_124247_030--Hb_177880_010 Hb_004834_020 Hb_004834_020 Hb_124247_030--Hb_004834_020 Hb_007320_040 Hb_007320_040 Hb_124247_030--Hb_007320_040 Hb_000720_010 Hb_000720_010 Hb_006153_190--Hb_000720_010 Hb_011161_060 Hb_011161_060 Hb_006153_190--Hb_011161_060 Hb_000671_010 Hb_000671_010 Hb_006153_190--Hb_000671_010 Hb_001213_010 Hb_001213_010 Hb_006153_190--Hb_001213_010 Hb_006153_190--Hb_126535_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.219985 0.161993 1.19338 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 12.0036 0

CAGE analysis