Hb_001165_040

Information

Type -
Description -
Location Contig1165: 79370-80782
Sequence    

Annotation

kegg
ID pop:POPTR_0009s10120g
description POPTRDRAFT_804280; hypothetical protein
nr
ID XP_002313133.1
description hypothetical protein POPTR_0009s10120g [Populus trichocarpa]
swissprot
ID Q9AT54
description Scopoletin glucosyltransferase OS=Nicotiana tabacum GN=TOGT1 PE=1 SV=1
trembl
ID B9HS37
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s10120g PE=3 SV=1
Gene Ontology
ID GO:0047213
description scopoletin glucosyltransferase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001165_040 0.0 - - hypothetical protein POPTR_0009s10120g [Populus trichocarpa]
2 Hb_009545_040 0.0558167689 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000120_440 0.0661869532 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002835_030 0.0665514327 - - PREDICTED: lysM domain receptor-like kinase 4 [Vitis vinifera]
5 Hb_000462_100 0.0713573219 - - Leucoanthocyanidin dioxygenase, putative [Ricinus communis]
6 Hb_010839_040 0.0725677793 - - hypothetical protein JCGZ_20868 [Jatropha curcas]
7 Hb_004037_010 0.0792348368 - - PREDICTED: uncharacterized protein LOC105632369 [Jatropha curcas]
8 Hb_002758_020 0.0795351339 - - PREDICTED: putative auxin efflux carrier component 5 [Jatropha curcas]
9 Hb_025490_030 0.081086752 - - PREDICTED: uncharacterized protein LOC105629177 [Jatropha curcas]
10 Hb_166232_010 0.0889031523 - - hypothetical protein JCGZ_22831 [Jatropha curcas]
11 Hb_000021_090 0.0929762167 - - -
12 Hb_000589_280 0.0949538158 - - PREDICTED: glycerol-3-phosphate acyltransferase 5 [Jatropha curcas]
13 Hb_001930_060 0.1016785182 - - PREDICTED: cytochrome P450 71D9-like [Fragaria vesca subsp. vesca]
14 Hb_005066_010 0.1073924136 - - FAD-binding domain-containing family protein [Populus trichocarpa]
15 Hb_033865_020 0.1075759696 - - -
16 Hb_000948_040 0.1076643629 - - PREDICTED: germin-like protein subfamily 1 member 13 [Jatropha curcas]
17 Hb_005464_040 0.1098457901 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
18 Hb_000205_290 0.1132125792 - - -
19 Hb_001546_090 0.113892408 transcription factor TF Family: MYB PREDICTED: transcription factor MYB114-like [Jatropha curcas]
20 Hb_000563_080 0.1147020156 - - -

Gene co-expression network

sample Hb_001165_040 Hb_001165_040 Hb_009545_040 Hb_009545_040 Hb_001165_040--Hb_009545_040 Hb_000120_440 Hb_000120_440 Hb_001165_040--Hb_000120_440 Hb_002835_030 Hb_002835_030 Hb_001165_040--Hb_002835_030 Hb_000462_100 Hb_000462_100 Hb_001165_040--Hb_000462_100 Hb_010839_040 Hb_010839_040 Hb_001165_040--Hb_010839_040 Hb_004037_010 Hb_004037_010 Hb_001165_040--Hb_004037_010 Hb_009545_040--Hb_000120_440 Hb_000021_090 Hb_000021_090 Hb_009545_040--Hb_000021_090 Hb_009545_040--Hb_004037_010 Hb_025490_030 Hb_025490_030 Hb_009545_040--Hb_025490_030 Hb_006153_190 Hb_006153_190 Hb_009545_040--Hb_006153_190 Hb_000120_440--Hb_000021_090 Hb_000120_440--Hb_004037_010 Hb_000005_270 Hb_000005_270 Hb_000120_440--Hb_000005_270 Hb_000513_110 Hb_000513_110 Hb_000120_440--Hb_000513_110 Hb_002835_030--Hb_010839_040 Hb_002835_030--Hb_000462_100 Hb_002758_020 Hb_002758_020 Hb_002835_030--Hb_002758_020 Hb_000589_280 Hb_000589_280 Hb_002835_030--Hb_000589_280 Hb_166232_010 Hb_166232_010 Hb_002835_030--Hb_166232_010 Hb_100786_010 Hb_100786_010 Hb_002835_030--Hb_100786_010 Hb_000462_100--Hb_010839_040 Hb_000462_100--Hb_000589_280 Hb_000462_100--Hb_002758_020 Hb_000462_100--Hb_100786_010 Hb_005464_040 Hb_005464_040 Hb_000462_100--Hb_005464_040 Hb_010839_040--Hb_000589_280 Hb_010839_040--Hb_002758_020 Hb_010839_040--Hb_100786_010 Hb_010839_040--Hb_166232_010 Hb_004037_010--Hb_000021_090 Hb_004037_010--Hb_025490_030 Hb_000076_200 Hb_000076_200 Hb_004037_010--Hb_000076_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0997638 0 0.258223 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 4.00704 0

CAGE analysis