Hb_094439_030

Information

Type -
Description -
Location Contig94439: 26728-43484
Sequence    

Annotation

kegg
ID egr:104435431
description probable S-adenosylmethionine-dependent methyltransferase At5g38780
nr
ID XP_010046486.1
description PREDICTED: probable S-adenosylmethionine-dependent methyltransferase At5g38780 [Eucalyptus grandis]
swissprot
ID Q9LS10
description Probable S-adenosylmethionine-dependent methyltransferase At5g38100 OS=Arabidopsis thaliana GN=At5g38100 PE=2 SV=1
trembl
ID A0A067KPS3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04780 PE=4 SV=1
Gene Ontology
ID GO:0008168
description probable s-adenosylmethionine-dependent methyltransferase at5g38100

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63242: 32005-32563
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_094439_030 0.0 - - PREDICTED: probable S-adenosylmethionine-dependent methyltransferase At5g38780 [Eucalyptus grandis]
2 Hb_026284_010 0.0440610896 - - -
3 Hb_105134_010 0.1049437582 - - hypothetical protein JCGZ_16347 [Jatropha curcas]
4 Hb_033843_020 0.116593124 - - lysosomal alpha-mannosidase, putative [Ricinus communis]
5 Hb_005550_040 0.1218968934 - - PREDICTED: epoxide hydrolase 4-like [Jatropha curcas]
6 Hb_002965_130 0.1248634582 - - PREDICTED: protein FAR1-RELATED SEQUENCE 11-like [Jatropha curcas]
7 Hb_046770_010 0.1261486594 - - conserved hypothetical protein [Ricinus communis]
8 Hb_018202_060 0.1410379722 - - PREDICTED: germin-like protein subfamily 1 member 13 [Jatropha curcas]
9 Hb_000330_120 0.14176743 - - PREDICTED: bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase-like [Nelumbo nucifera]
10 Hb_003189_020 0.1476576163 - - PREDICTED: probable glutathione S-transferase [Jatropha curcas]
11 Hb_035726_010 0.1508680873 - - Insulin-degrading enzyme, putative [Ricinus communis]
12 Hb_000751_050 0.1561854009 - - PREDICTED: extensin, partial [Solanum lycopersicum]
13 Hb_000380_130 0.161175497 - - Phenylalanine ammonia-lyase, putative [Ricinus communis]
14 Hb_000061_360 0.1628309287 - - Brassinosteroid LRR receptor kinase precursor, putative [Ricinus communis]
15 Hb_035726_020 0.1680868083 - - Insulinase (Peptidase family M16) family protein [Theobroma cacao]
16 Hb_000946_030 0.1717165216 - - hypothetical protein JCGZ_10707 [Jatropha curcas]
17 Hb_011671_420 0.1736934889 - - hypothetical protein POPTR_0015s12340g [Populus trichocarpa]
18 Hb_022815_020 0.1744536776 - - PREDICTED: uncharacterized protein LOC105650107 [Jatropha curcas]
19 Hb_001172_030 0.1752709869 - - PREDICTED: protein NRT1/ PTR FAMILY 7.2-like isoform X1 [Jatropha curcas]
20 Hb_000567_300 0.1762973283 - - PREDICTED: protein YLS9-like [Jatropha curcas]

Gene co-expression network

sample Hb_094439_030 Hb_094439_030 Hb_026284_010 Hb_026284_010 Hb_094439_030--Hb_026284_010 Hb_105134_010 Hb_105134_010 Hb_094439_030--Hb_105134_010 Hb_033843_020 Hb_033843_020 Hb_094439_030--Hb_033843_020 Hb_005550_040 Hb_005550_040 Hb_094439_030--Hb_005550_040 Hb_002965_130 Hb_002965_130 Hb_094439_030--Hb_002965_130 Hb_046770_010 Hb_046770_010 Hb_094439_030--Hb_046770_010 Hb_026284_010--Hb_033843_020 Hb_018202_060 Hb_018202_060 Hb_026284_010--Hb_018202_060 Hb_026284_010--Hb_002965_130 Hb_026284_010--Hb_105134_010 Hb_026284_010--Hb_005550_040 Hb_003189_020 Hb_003189_020 Hb_105134_010--Hb_003189_020 Hb_105134_010--Hb_046770_010 Hb_105134_010--Hb_005550_040 Hb_156499_010 Hb_156499_010 Hb_105134_010--Hb_156499_010 Hb_035726_010 Hb_035726_010 Hb_033843_020--Hb_035726_010 Hb_035726_020 Hb_035726_020 Hb_033843_020--Hb_035726_020 Hb_001172_030 Hb_001172_030 Hb_033843_020--Hb_001172_030 Hb_022815_020 Hb_022815_020 Hb_033843_020--Hb_022815_020 Hb_115414_010 Hb_115414_010 Hb_033843_020--Hb_115414_010 Hb_001003_020 Hb_001003_020 Hb_033843_020--Hb_001003_020 Hb_005550_040--Hb_003189_020 Hb_178703_010 Hb_178703_010 Hb_005550_040--Hb_178703_010 Hb_000061_360 Hb_000061_360 Hb_005550_040--Hb_000061_360 Hb_001949_010 Hb_001949_010 Hb_005550_040--Hb_001949_010 Hb_005550_040--Hb_046770_010 Hb_002965_130--Hb_018202_060 Hb_000330_120 Hb_000330_120 Hb_002965_130--Hb_000330_120 Hb_000946_030 Hb_000946_030 Hb_002965_130--Hb_000946_030 Hb_002965_130--Hb_105134_010 Hb_001218_070 Hb_001218_070 Hb_046770_010--Hb_001218_070 Hb_109673_010 Hb_109673_010 Hb_046770_010--Hb_109673_010 Hb_000380_130 Hb_000380_130 Hb_046770_010--Hb_000380_130 Hb_046770_010--Hb_003189_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00700294 0.500527 1.64379 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0482617 19.3918 6.64686

CAGE analysis