Hb_018202_060

Information

Type -
Description -
Location Contig18202: 47302-48511
Sequence    

Annotation

kegg
ID pop:POPTR_0004s18690g
description POPTRDRAFT_1077107; hypothetical protein
nr
ID XP_012081142.1
description PREDICTED: germin-like protein subfamily 1 member 13 [Jatropha curcas]
swissprot
ID P92997
description Germin-like protein subfamily 1 member 13 OS=Arabidopsis thaliana GN=GLP6 PE=2 SV=2
trembl
ID A0A067LDL8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09557 PE=4 SV=1
Gene Ontology
ID GO:0005576
description germin-like protein subfamily 1 member 13

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_018202_060 0.0 - - PREDICTED: germin-like protein subfamily 1 member 13 [Jatropha curcas]
2 Hb_007757_090 0.1097373167 - - PREDICTED: uncharacterized protein LOC105793478 [Gossypium raimondii]
3 Hb_006261_010 0.109882886 - - PREDICTED: uncharacterized protein LOC104110884 [Nicotiana tomentosiformis]
4 Hb_005625_050 0.110058493 - - hypothetical protein PRUPE_ppa024499mg, partial [Prunus persica]
5 Hb_019299_050 0.1137961588 - - -
6 Hb_026284_010 0.1153249442 - - -
7 Hb_000946_020 0.1169343481 - - hypothetical protein PRUPE_ppa023262mg [Prunus persica]
8 Hb_002965_130 0.1208583867 - - PREDICTED: protein FAR1-RELATED SEQUENCE 11-like [Jatropha curcas]
9 Hb_169597_010 0.1276816366 - - PREDICTED: uncharacterized protein LOC104903465 [Beta vulgaris subsp. vulgaris]
10 Hb_000967_030 0.1300104035 - - -
11 Hb_003927_030 0.1303988278 - - unnamed protein product [Coffea canephora]
12 Hb_000052_030 0.131121323 - - -
13 Hb_000159_030 0.1401843027 - - putative glycosyltransferase, partial [Aralia elata]
14 Hb_094439_030 0.1410379722 - - PREDICTED: probable S-adenosylmethionine-dependent methyltransferase At5g38780 [Eucalyptus grandis]
15 Hb_159957_020 0.1412440378 - - -
16 Hb_002570_050 0.1450552263 - - PREDICTED: uncharacterized protein LOC104897677 [Beta vulgaris subsp. vulgaris]
17 Hb_055880_010 0.1568687403 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
18 Hb_093039_010 0.1575474625 - - JHL22C18.10 [Jatropha curcas]
19 Hb_009142_030 0.1590048439 - - UDP-glucosyltransferase, putative [Ricinus communis]
20 Hb_000190_130 0.1601683306 - - cysteine protease inhibitor [Populus tremula]

Gene co-expression network

sample Hb_018202_060 Hb_018202_060 Hb_007757_090 Hb_007757_090 Hb_018202_060--Hb_007757_090 Hb_006261_010 Hb_006261_010 Hb_018202_060--Hb_006261_010 Hb_005625_050 Hb_005625_050 Hb_018202_060--Hb_005625_050 Hb_019299_050 Hb_019299_050 Hb_018202_060--Hb_019299_050 Hb_026284_010 Hb_026284_010 Hb_018202_060--Hb_026284_010 Hb_000946_020 Hb_000946_020 Hb_018202_060--Hb_000946_020 Hb_007757_090--Hb_006261_010 Hb_007757_090--Hb_005625_050 Hb_007757_090--Hb_019299_050 Hb_007757_090--Hb_000946_020 Hb_169597_010 Hb_169597_010 Hb_007757_090--Hb_169597_010 Hb_000967_030 Hb_000967_030 Hb_007757_090--Hb_000967_030 Hb_006261_010--Hb_005625_050 Hb_006261_010--Hb_000946_020 Hb_006261_010--Hb_019299_050 Hb_006261_010--Hb_169597_010 Hb_003927_030 Hb_003927_030 Hb_006261_010--Hb_003927_030 Hb_005625_050--Hb_019299_050 Hb_005625_050--Hb_000946_020 Hb_005625_050--Hb_000967_030 Hb_005625_050--Hb_169597_010 Hb_019299_050--Hb_000967_030 Hb_000159_030 Hb_000159_030 Hb_019299_050--Hb_000159_030 Hb_159957_020 Hb_159957_020 Hb_019299_050--Hb_159957_020 Hb_094439_030 Hb_094439_030 Hb_026284_010--Hb_094439_030 Hb_033843_020 Hb_033843_020 Hb_026284_010--Hb_033843_020 Hb_002965_130 Hb_002965_130 Hb_026284_010--Hb_002965_130 Hb_105134_010 Hb_105134_010 Hb_026284_010--Hb_105134_010 Hb_005550_040 Hb_005550_040 Hb_026284_010--Hb_005550_040 Hb_000946_020--Hb_169597_010 Hb_000946_020--Hb_003927_030 Hb_000052_030 Hb_000052_030 Hb_000946_020--Hb_000052_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.291052 0.939197 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0450733 0 33.928 18.2121

CAGE analysis