Hb_159957_020

Information

Type -
Description -
Location Contig159957: 1098-1328
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_159957_020 0.0 - - -
2 Hb_000159_030 0.0017093681 - - putative glycosyltransferase, partial [Aralia elata]
3 Hb_000967_030 0.0193773022 - - -
4 Hb_055880_010 0.0234234548 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
5 Hb_009142_030 0.0264300552 - - UDP-glucosyltransferase, putative [Ricinus communis]
6 Hb_001514_160 0.0283740104 - - hypothetical protein JCGZ_16070 [Jatropha curcas]
7 Hb_014034_010 0.0330721577 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
8 Hb_002890_050 0.0340427888 - - -
9 Hb_001221_120 0.0365035008 - - cytochrome P450, putative [Ricinus communis]
10 Hb_019299_050 0.0592174171 - - -
11 Hb_005625_050 0.0810003556 - - hypothetical protein PRUPE_ppa024499mg, partial [Prunus persica]
12 Hb_007757_090 0.0887712824 - - PREDICTED: uncharacterized protein LOC105793478 [Gossypium raimondii]
13 Hb_006261_010 0.095160517 - - PREDICTED: uncharacterized protein LOC104110884 [Nicotiana tomentosiformis]
14 Hb_039791_010 0.1088129003 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like isoform X2 [Jatropha curcas]
15 Hb_000946_020 0.1298912857 - - hypothetical protein PRUPE_ppa023262mg [Prunus persica]
16 Hb_018202_060 0.1412440378 - - PREDICTED: germin-like protein subfamily 1 member 13 [Jatropha curcas]
17 Hb_115414_010 0.1531675232 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like [Jatropha curcas]
18 Hb_001959_280 0.1533936891 - - PREDICTED: uncharacterized protein LOC105638432 [Jatropha curcas]
19 Hb_169597_010 0.1547437591 - - PREDICTED: uncharacterized protein LOC104903465 [Beta vulgaris subsp. vulgaris]
20 Hb_003927_030 0.1599005778 - - unnamed protein product [Coffea canephora]

Gene co-expression network

sample Hb_159957_020 Hb_159957_020 Hb_000159_030 Hb_000159_030 Hb_159957_020--Hb_000159_030 Hb_000967_030 Hb_000967_030 Hb_159957_020--Hb_000967_030 Hb_055880_010 Hb_055880_010 Hb_159957_020--Hb_055880_010 Hb_009142_030 Hb_009142_030 Hb_159957_020--Hb_009142_030 Hb_001514_160 Hb_001514_160 Hb_159957_020--Hb_001514_160 Hb_014034_010 Hb_014034_010 Hb_159957_020--Hb_014034_010 Hb_000159_030--Hb_000967_030 Hb_000159_030--Hb_055880_010 Hb_000159_030--Hb_009142_030 Hb_000159_030--Hb_001514_160 Hb_000159_030--Hb_014034_010 Hb_019299_050 Hb_019299_050 Hb_000967_030--Hb_019299_050 Hb_000967_030--Hb_055880_010 Hb_000967_030--Hb_009142_030 Hb_000967_030--Hb_001514_160 Hb_055880_010--Hb_009142_030 Hb_055880_010--Hb_001514_160 Hb_055880_010--Hb_014034_010 Hb_002890_050 Hb_002890_050 Hb_055880_010--Hb_002890_050 Hb_001221_120 Hb_001221_120 Hb_055880_010--Hb_001221_120 Hb_009142_030--Hb_001514_160 Hb_009142_030--Hb_014034_010 Hb_009142_030--Hb_002890_050 Hb_009142_030--Hb_001221_120 Hb_001514_160--Hb_014034_010 Hb_001514_160--Hb_002890_050 Hb_001514_160--Hb_001221_120 Hb_014034_010--Hb_002890_050 Hb_014034_010--Hb_001221_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.45368 0.83025

CAGE analysis