Hb_055880_010

Information

Type -
Description -
Location Contig55880: 67-429
Sequence    

Annotation

kegg
ID rcu:RCOM_1318870
description serine-threonine protein kinase, plant-type, putative (EC:1.3.1.74)
nr
ID XP_002529272.1
description serine-threonine protein kinase, plant-type, putative [Ricinus communis]
swissprot
ID Q9SD62
description Putative receptor-like protein kinase At3g47110 OS=Arabidopsis thaliana GN=At3g47110 PE=3 SV=1
trembl
ID B9STF3
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_1318870 PE=3 SV=1
Gene Ontology
ID GO:0016021
description serine-threonine protein plant-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_055880_010 0.0 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
2 Hb_009142_030 0.0030077446 - - UDP-glucosyltransferase, putative [Ricinus communis]
3 Hb_001514_160 0.0049525842 - - hypothetical protein JCGZ_16070 [Jatropha curcas]
4 Hb_014034_010 0.0096533448 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
5 Hb_002890_050 0.0106246008 - - -
6 Hb_001221_120 0.0130870288 - - cytochrome P450, putative [Ricinus communis]
7 Hb_159957_020 0.0234234548 - - -
8 Hb_000159_030 0.0251322301 - - putative glycosyltransferase, partial [Aralia elata]
9 Hb_000967_030 0.0427896083 - - -
10 Hb_019299_050 0.082578714 - - -
11 Hb_039791_010 0.0855421901 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like isoform X2 [Jatropha curcas]
12 Hb_005625_050 0.1043195278 - - hypothetical protein PRUPE_ppa024499mg, partial [Prunus persica]
13 Hb_007757_090 0.1120732158 - - PREDICTED: uncharacterized protein LOC105793478 [Gossypium raimondii]
14 Hb_006261_010 0.1184474464 - - PREDICTED: uncharacterized protein LOC104110884 [Nicotiana tomentosiformis]
15 Hb_115414_010 0.142440418 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like [Jatropha curcas]
16 Hb_001959_280 0.1477920688 - - PREDICTED: uncharacterized protein LOC105638432 [Jatropha curcas]
17 Hb_035726_010 0.1530330254 - - Insulin-degrading enzyme, putative [Ricinus communis]
18 Hb_000946_020 0.153084328 - - hypothetical protein PRUPE_ppa023262mg [Prunus persica]
19 Hb_018202_060 0.1568687403 - - PREDICTED: germin-like protein subfamily 1 member 13 [Jatropha curcas]
20 Hb_033843_020 0.1631057814 - - lysosomal alpha-mannosidase, putative [Ricinus communis]

Gene co-expression network

sample Hb_055880_010 Hb_055880_010 Hb_009142_030 Hb_009142_030 Hb_055880_010--Hb_009142_030 Hb_001514_160 Hb_001514_160 Hb_055880_010--Hb_001514_160 Hb_014034_010 Hb_014034_010 Hb_055880_010--Hb_014034_010 Hb_002890_050 Hb_002890_050 Hb_055880_010--Hb_002890_050 Hb_001221_120 Hb_001221_120 Hb_055880_010--Hb_001221_120 Hb_159957_020 Hb_159957_020 Hb_055880_010--Hb_159957_020 Hb_009142_030--Hb_001514_160 Hb_009142_030--Hb_014034_010 Hb_009142_030--Hb_002890_050 Hb_009142_030--Hb_001221_120 Hb_009142_030--Hb_159957_020 Hb_001514_160--Hb_014034_010 Hb_001514_160--Hb_002890_050 Hb_001514_160--Hb_001221_120 Hb_001514_160--Hb_159957_020 Hb_014034_010--Hb_002890_050 Hb_014034_010--Hb_001221_120 Hb_014034_010--Hb_159957_020 Hb_002890_050--Hb_001221_120 Hb_002890_050--Hb_159957_020 Hb_001221_120--Hb_159957_020 Hb_000159_030 Hb_000159_030 Hb_159957_020--Hb_000159_030 Hb_000967_030 Hb_000967_030 Hb_159957_020--Hb_000967_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.16732 0.644585

CAGE analysis