Hb_014034_010

Information

Type -
Description -
Location Contig14034: 2911-5601
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_009787832.1
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
swissprot
ID P04323
description Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster GN=pol PE=3 SV=1
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_014034_010 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
2 Hb_002890_050 0.0009713212 - - -
3 Hb_001221_120 0.0034339692 - - cytochrome P450, putative [Ricinus communis]
4 Hb_001514_160 0.0047009065 - - hypothetical protein JCGZ_16070 [Jatropha curcas]
5 Hb_009142_030 0.0066457251 - - UDP-glucosyltransferase, putative [Ricinus communis]
6 Hb_055880_010 0.0096533448 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
7 Hb_159957_020 0.0330721577 - - -
8 Hb_000159_030 0.0347803509 - - putative glycosyltransferase, partial [Aralia elata]
9 Hb_000967_030 0.0524299016 - - -
10 Hb_039791_010 0.0759353466 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like isoform X2 [Jatropha curcas]
11 Hb_019299_050 0.0921902944 - - -
12 Hb_005625_050 0.1139096648 - - hypothetical protein PRUPE_ppa024499mg, partial [Prunus persica]
13 Hb_007757_090 0.1216548168 - - PREDICTED: uncharacterized protein LOC105793478 [Gossypium raimondii]
14 Hb_006261_010 0.1280216974 - - PREDICTED: uncharacterized protein LOC104110884 [Nicotiana tomentosiformis]
15 Hb_115414_010 0.1388984181 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like [Jatropha curcas]
16 Hb_001959_280 0.1464880577 - - PREDICTED: uncharacterized protein LOC105638432 [Jatropha curcas]
17 Hb_035726_010 0.150667478 - - Insulin-degrading enzyme, putative [Ricinus communis]
18 Hb_033843_020 0.1617674911 - - lysosomal alpha-mannosidase, putative [Ricinus communis]
19 Hb_000946_020 0.1626137241 - - hypothetical protein PRUPE_ppa023262mg [Prunus persica]
20 Hb_018202_060 0.1638136116 - - PREDICTED: germin-like protein subfamily 1 member 13 [Jatropha curcas]

Gene co-expression network

sample Hb_014034_010 Hb_014034_010 Hb_002890_050 Hb_002890_050 Hb_014034_010--Hb_002890_050 Hb_001221_120 Hb_001221_120 Hb_014034_010--Hb_001221_120 Hb_001514_160 Hb_001514_160 Hb_014034_010--Hb_001514_160 Hb_009142_030 Hb_009142_030 Hb_014034_010--Hb_009142_030 Hb_055880_010 Hb_055880_010 Hb_014034_010--Hb_055880_010 Hb_159957_020 Hb_159957_020 Hb_014034_010--Hb_159957_020 Hb_002890_050--Hb_001221_120 Hb_002890_050--Hb_001514_160 Hb_002890_050--Hb_009142_030 Hb_002890_050--Hb_055880_010 Hb_002890_050--Hb_159957_020 Hb_001221_120--Hb_001514_160 Hb_001221_120--Hb_009142_030 Hb_001221_120--Hb_055880_010 Hb_001221_120--Hb_159957_020 Hb_001514_160--Hb_009142_030 Hb_001514_160--Hb_055880_010 Hb_001514_160--Hb_159957_020 Hb_009142_030--Hb_055880_010 Hb_009142_030--Hb_159957_020 Hb_055880_010--Hb_159957_020 Hb_000159_030 Hb_000159_030 Hb_159957_020--Hb_000159_030 Hb_000967_030 Hb_000967_030 Hb_159957_020--Hb_000967_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.106057 0.0298699

CAGE analysis