Hb_019299_050

Information

Type -
Description -
Location Contig19299: 54143-60230
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_019299_050 0.0 - - -
2 Hb_005625_050 0.0218327067 - - hypothetical protein PRUPE_ppa024499mg, partial [Prunus persica]
3 Hb_007757_090 0.0296272118 - - PREDICTED: uncharacterized protein LOC105793478 [Gossypium raimondii]
4 Hb_006261_010 0.0360380358 - - PREDICTED: uncharacterized protein LOC104110884 [Nicotiana tomentosiformis]
5 Hb_000967_030 0.0398635687 - - -
6 Hb_000159_030 0.0575111034 - - putative glycosyltransferase, partial [Aralia elata]
7 Hb_159957_020 0.0592174171 - - -
8 Hb_000946_020 0.0709191985 - - hypothetical protein PRUPE_ppa023262mg [Prunus persica]
9 Hb_055880_010 0.082578714 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
10 Hb_009142_030 0.0855744928 - - UDP-glucosyltransferase, putative [Ricinus communis]
11 Hb_001514_160 0.0875110939 - - hypothetical protein JCGZ_16070 [Jatropha curcas]
12 Hb_014034_010 0.0921902944 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
13 Hb_002890_050 0.0931568021 - - -
14 Hb_001221_120 0.0956067364 - - cytochrome P450, putative [Ricinus communis]
15 Hb_169597_010 0.0959113853 - - PREDICTED: uncharacterized protein LOC104903465 [Beta vulgaris subsp. vulgaris]
16 Hb_003927_030 0.1011003533 - - unnamed protein product [Coffea canephora]
17 Hb_000052_030 0.1024345267 - - -
18 Hb_018202_060 0.1137961588 - - PREDICTED: germin-like protein subfamily 1 member 13 [Jatropha curcas]
19 Hb_002570_050 0.1256188011 - - PREDICTED: uncharacterized protein LOC104897677 [Beta vulgaris subsp. vulgaris]
20 Hb_093039_010 0.1438640907 - - JHL22C18.10 [Jatropha curcas]

Gene co-expression network

sample Hb_019299_050 Hb_019299_050 Hb_005625_050 Hb_005625_050 Hb_019299_050--Hb_005625_050 Hb_007757_090 Hb_007757_090 Hb_019299_050--Hb_007757_090 Hb_006261_010 Hb_006261_010 Hb_019299_050--Hb_006261_010 Hb_000967_030 Hb_000967_030 Hb_019299_050--Hb_000967_030 Hb_000159_030 Hb_000159_030 Hb_019299_050--Hb_000159_030 Hb_159957_020 Hb_159957_020 Hb_019299_050--Hb_159957_020 Hb_005625_050--Hb_007757_090 Hb_005625_050--Hb_006261_010 Hb_000946_020 Hb_000946_020 Hb_005625_050--Hb_000946_020 Hb_005625_050--Hb_000967_030 Hb_169597_010 Hb_169597_010 Hb_005625_050--Hb_169597_010 Hb_007757_090--Hb_006261_010 Hb_007757_090--Hb_000946_020 Hb_007757_090--Hb_169597_010 Hb_007757_090--Hb_000967_030 Hb_006261_010--Hb_000946_020 Hb_006261_010--Hb_169597_010 Hb_003927_030 Hb_003927_030 Hb_006261_010--Hb_003927_030 Hb_000967_030--Hb_000159_030 Hb_000967_030--Hb_159957_020 Hb_055880_010 Hb_055880_010 Hb_000967_030--Hb_055880_010 Hb_009142_030 Hb_009142_030 Hb_000967_030--Hb_009142_030 Hb_001514_160 Hb_001514_160 Hb_000967_030--Hb_001514_160 Hb_000159_030--Hb_159957_020 Hb_000159_030--Hb_055880_010 Hb_000159_030--Hb_009142_030 Hb_000159_030--Hb_001514_160 Hb_014034_010 Hb_014034_010 Hb_000159_030--Hb_014034_010 Hb_159957_020--Hb_055880_010 Hb_159957_020--Hb_009142_030 Hb_159957_020--Hb_001514_160 Hb_159957_020--Hb_014034_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.756039 0.34875

CAGE analysis