Hb_001003_020

Information

Type -
Description -
Location Contig1003: 61671-62225
Sequence    

Annotation

kegg
ID pop:POPTR_0013s03350g
description POPTRDRAFT_241047; hypothetical protein
nr
ID XP_011003818.1
description PREDICTED: metalloendoproteinase 1-like [Populus euphratica]
swissprot
ID P29136
description Metalloendoproteinase 1 OS=Glycine max PE=1 SV=2
trembl
ID B9I890
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s03350g PE=4 SV=2
Gene Ontology
ID GO:0008233
description metalloendoproteinase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001003_020 0.0 - - PREDICTED: metalloendoproteinase 1-like [Populus euphratica]
2 Hb_035726_020 0.0603440748 - - Insulinase (Peptidase family M16) family protein [Theobroma cacao]
3 Hb_003189_030 0.0678798142 - - hypothetical protein Csa_4G304750 [Cucumis sativus]
4 Hb_000659_010 0.0744297154 - - PREDICTED: plasma membrane ATPase 2-like isoform X1 [Jatropha curcas]
5 Hb_022815_020 0.078995508 - - PREDICTED: uncharacterized protein LOC105650107 [Jatropha curcas]
6 Hb_004222_010 0.1017999737 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like [Jatropha curcas]
7 Hb_033843_020 0.1096149053 - - lysosomal alpha-mannosidase, putative [Ricinus communis]
8 Hb_000466_090 0.1113355334 - - PREDICTED: E3 ubiquitin-protein ligase RGLG2-like isoform X1 [Jatropha curcas]
9 Hb_001172_030 0.1160156664 - - PREDICTED: protein NRT1/ PTR FAMILY 7.2-like isoform X1 [Jatropha curcas]
10 Hb_002173_080 0.1230623266 - - alcohol dehydrogenase, putative [Ricinus communis]
11 Hb_035726_010 0.1241525466 - - Insulin-degrading enzyme, putative [Ricinus communis]
12 Hb_175968_010 0.1329477164 - - hypothetical protein JCGZ_21281 [Jatropha curcas]
13 Hb_115414_010 0.13299959 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like [Jatropha curcas]
14 Hb_000487_150 0.138603351 - - PREDICTED: feruloyl CoA ortho-hydroxylase 2-like [Jatropha curcas]
15 Hb_005171_060 0.1397559979 - - alcohol dehydrogenase, putative [Ricinus communis]
16 Hb_097908_010 0.1409872392 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 isoform X2 [Jatropha curcas]
17 Hb_004055_180 0.1417458838 - - cell wall invertase [Manihot esculenta]
18 Hb_000567_300 0.1438213528 - - PREDICTED: protein YLS9-like [Jatropha curcas]
19 Hb_029571_010 0.1449087627 - - PREDICTED: polygalacturonase QRT3 [Jatropha curcas]
20 Hb_135392_010 0.1476132103 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Jatropha curcas]

Gene co-expression network

sample Hb_001003_020 Hb_001003_020 Hb_035726_020 Hb_035726_020 Hb_001003_020--Hb_035726_020 Hb_003189_030 Hb_003189_030 Hb_001003_020--Hb_003189_030 Hb_000659_010 Hb_000659_010 Hb_001003_020--Hb_000659_010 Hb_022815_020 Hb_022815_020 Hb_001003_020--Hb_022815_020 Hb_004222_010 Hb_004222_010 Hb_001003_020--Hb_004222_010 Hb_033843_020 Hb_033843_020 Hb_001003_020--Hb_033843_020 Hb_035726_020--Hb_003189_030 Hb_035726_020--Hb_022815_020 Hb_035726_020--Hb_033843_020 Hb_035726_010 Hb_035726_010 Hb_035726_020--Hb_035726_010 Hb_035726_020--Hb_000659_010 Hb_000466_090 Hb_000466_090 Hb_003189_030--Hb_000466_090 Hb_002173_080 Hb_002173_080 Hb_003189_030--Hb_002173_080 Hb_006620_040 Hb_006620_040 Hb_003189_030--Hb_006620_040 Hb_003189_030--Hb_000659_010 Hb_000659_010--Hb_022815_020 Hb_175968_010 Hb_175968_010 Hb_000659_010--Hb_175968_010 Hb_000659_010--Hb_004222_010 Hb_001279_220 Hb_001279_220 Hb_000659_010--Hb_001279_220 Hb_001172_030 Hb_001172_030 Hb_022815_020--Hb_001172_030 Hb_022815_020--Hb_004222_010 Hb_022815_020--Hb_033843_020 Hb_004222_010--Hb_175968_010 Hb_004055_180 Hb_004055_180 Hb_004222_010--Hb_004055_180 Hb_097908_010 Hb_097908_010 Hb_004222_010--Hb_097908_010 Hb_033843_020--Hb_035726_010 Hb_033843_020--Hb_001172_030 Hb_115414_010 Hb_115414_010 Hb_033843_020--Hb_115414_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.609204 2.61659 1.66413 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.154276 68.7627 8.52631

CAGE analysis