Hb_000330_120

Information

Type -
Description -
Location Contig330: 109266-110950
Sequence    

Annotation

kegg
ID atr:s00011p00218290
description AMTR_s00011p00218290; hypothetical protein
nr
ID XP_010245915.1
description PREDICTED: bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase-like [Nelumbo nucifera]
swissprot
ID -
description -
trembl
ID H9MBM3
description Uncharacterized protein (Fragment) OS=Pinus radiata GN=CL214Contig1_08 PE=4 SV=1
Gene Ontology
ID GO:0003824
description dihydroflavonol 4-reductase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34706: 70490-123841
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000330_120 0.0 - - PREDICTED: bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase-like [Nelumbo nucifera]
2 Hb_000946_030 0.1136473894 - - hypothetical protein JCGZ_10707 [Jatropha curcas]
3 Hb_002965_130 0.1249834101 - - PREDICTED: protein FAR1-RELATED SEQUENCE 11-like [Jatropha curcas]
4 Hb_078081_020 0.134349336 - - -
5 Hb_094439_030 0.14176743 - - PREDICTED: probable S-adenosylmethionine-dependent methyltransferase At5g38780 [Eucalyptus grandis]
6 Hb_026284_010 0.1485226477 - - -
7 Hb_000751_050 0.1527046036 - - PREDICTED: extensin, partial [Solanum lycopersicum]
8 Hb_011671_420 0.1597669094 - - hypothetical protein POPTR_0015s12340g [Populus trichocarpa]
9 Hb_105134_010 0.1638303171 - - hypothetical protein JCGZ_16347 [Jatropha curcas]
10 Hb_046770_010 0.165258101 - - conserved hypothetical protein [Ricinus communis]
11 Hb_018202_060 0.1682106478 - - PREDICTED: germin-like protein subfamily 1 member 13 [Jatropha curcas]
12 Hb_001597_090 0.170381702 - - -
13 Hb_146930_010 0.178403965 - - -
14 Hb_145211_010 0.1812822633 - - hypothetical protein M569_05648, partial [Genlisea aurea]
15 Hb_010866_010 0.1833449154 - - PREDICTED: isoflavone 2'-hydroxylase-like [Vitis vinifera]
16 Hb_000380_130 0.1843634537 - - Phenylalanine ammonia-lyase, putative [Ricinus communis]
17 Hb_002566_010 0.1852758553 - - PREDICTED: uncharacterized protein LOC105643984 isoform X1 [Jatropha curcas]
18 Hb_007676_060 0.1905278442 - - PREDICTED: cellulose synthase-like protein E2 [Pyrus x bretschneideri]
19 Hb_031931_030 0.1935170544 - - lipid binding protein, putative [Ricinus communis]
20 Hb_005550_040 0.1965033306 - - PREDICTED: epoxide hydrolase 4-like [Jatropha curcas]

Gene co-expression network

sample Hb_000330_120 Hb_000330_120 Hb_000946_030 Hb_000946_030 Hb_000330_120--Hb_000946_030 Hb_002965_130 Hb_002965_130 Hb_000330_120--Hb_002965_130 Hb_078081_020 Hb_078081_020 Hb_000330_120--Hb_078081_020 Hb_094439_030 Hb_094439_030 Hb_000330_120--Hb_094439_030 Hb_026284_010 Hb_026284_010 Hb_000330_120--Hb_026284_010 Hb_000751_050 Hb_000751_050 Hb_000330_120--Hb_000751_050 Hb_010866_010 Hb_010866_010 Hb_000946_030--Hb_010866_010 Hb_000946_030--Hb_002965_130 Hb_145211_010 Hb_145211_010 Hb_000946_030--Hb_145211_010 Hb_059780_010 Hb_059780_010 Hb_000946_030--Hb_059780_010 Hb_000675_040 Hb_000675_040 Hb_000946_030--Hb_000675_040 Hb_018202_060 Hb_018202_060 Hb_002965_130--Hb_018202_060 Hb_002965_130--Hb_026284_010 Hb_002965_130--Hb_094439_030 Hb_105134_010 Hb_105134_010 Hb_002965_130--Hb_105134_010 Hb_078081_020--Hb_000751_050 Hb_146930_010 Hb_146930_010 Hb_078081_020--Hb_146930_010 Hb_130563_010 Hb_130563_010 Hb_078081_020--Hb_130563_010 Hb_078081_020--Hb_105134_010 Hb_011671_420 Hb_011671_420 Hb_078081_020--Hb_011671_420 Hb_094439_030--Hb_026284_010 Hb_094439_030--Hb_105134_010 Hb_033843_020 Hb_033843_020 Hb_094439_030--Hb_033843_020 Hb_005550_040 Hb_005550_040 Hb_094439_030--Hb_005550_040 Hb_046770_010 Hb_046770_010 Hb_094439_030--Hb_046770_010 Hb_026284_010--Hb_033843_020 Hb_026284_010--Hb_018202_060 Hb_026284_010--Hb_105134_010 Hb_026284_010--Hb_005550_040 Hb_000751_050--Hb_146930_010 Hb_001597_090 Hb_001597_090 Hb_000751_050--Hb_001597_090 Hb_000751_050--Hb_005550_040 Hb_001949_010 Hb_001949_010 Hb_000751_050--Hb_001949_010 Hb_178703_010 Hb_178703_010 Hb_000751_050--Hb_178703_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.730372 0.313431 4.62252 0 0.116347
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.297835 0.234209 0 34.4765 16.7418

CAGE analysis