Hb_011671_420

Information

Type -
Description -
Location Contig11671: 325077-325547
Sequence    

Annotation

kegg
ID pop:POPTR_0015s12340g
description hypothetical protein
nr
ID XP_006374592.1
description hypothetical protein POPTR_0015s12340g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5FQA5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s12340g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05184: 324883-325619
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011671_420 0.0 - - hypothetical protein POPTR_0015s12340g [Populus trichocarpa]
2 Hb_001218_070 0.1061097031 - - PREDICTED: sugar transport protein 5-like isoform X1 [Jatropha curcas]
3 Hb_046770_010 0.1120293551 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000380_130 0.1170620499 - - Phenylalanine ammonia-lyase, putative [Ricinus communis]
5 Hb_008768_010 0.1323171631 - - PREDICTED: equilibrative nucleotide transporter 8 isoform X1 [Jatropha curcas]
6 Hb_109673_010 0.1383550722 - - glutathione s-transferase, putative [Ricinus communis]
7 Hb_029769_010 0.1435581395 - - PREDICTED: putative disease resistance protein RGA3 isoform X3 [Populus euphratica]
8 Hb_031931_030 0.1438929417 - - lipid binding protein, putative [Ricinus communis]
9 Hb_130563_010 0.1450827519 - - PREDICTED: ABC transporter C family member 3-like isoform X1 [Jatropha curcas]
10 Hb_001900_130 0.1456446658 - - PREDICTED: uncharacterized protein LOC105632667 [Jatropha curcas]
11 Hb_033622_020 0.1517648982 - - lipid binding protein, putative [Ricinus communis]
12 Hb_000911_050 0.154152549 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 21 [Jatropha curcas]
13 Hb_000683_010 0.1556140622 - - Interleukin-1 receptor-associated kinase, putative [Ricinus communis]
14 Hb_078081_020 0.1568701146 - - -
15 Hb_010761_030 0.1584487789 - - cytochrome P450, putative [Ricinus communis]
16 Hb_004310_170 0.1584576677 - - PREDICTED: protein mago nashi homolog [Jatropha curcas]
17 Hb_000330_120 0.1597669094 - - PREDICTED: bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase-like [Nelumbo nucifera]
18 Hb_000422_020 0.1611171592 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
19 Hb_008226_020 0.1620920444 - - hypothetical protein JCGZ_03321 [Jatropha curcas]
20 Hb_105134_010 0.1622651374 - - hypothetical protein JCGZ_16347 [Jatropha curcas]

Gene co-expression network

sample Hb_011671_420 Hb_011671_420 Hb_001218_070 Hb_001218_070 Hb_011671_420--Hb_001218_070 Hb_046770_010 Hb_046770_010 Hb_011671_420--Hb_046770_010 Hb_000380_130 Hb_000380_130 Hb_011671_420--Hb_000380_130 Hb_008768_010 Hb_008768_010 Hb_011671_420--Hb_008768_010 Hb_109673_010 Hb_109673_010 Hb_011671_420--Hb_109673_010 Hb_029769_010 Hb_029769_010 Hb_011671_420--Hb_029769_010 Hb_001218_070--Hb_109673_010 Hb_001218_070--Hb_046770_010 Hb_001218_070--Hb_000380_130 Hb_001545_270 Hb_001545_270 Hb_001218_070--Hb_001545_270 Hb_033622_020 Hb_033622_020 Hb_001218_070--Hb_033622_020 Hb_046770_010--Hb_109673_010 Hb_046770_010--Hb_000380_130 Hb_003189_020 Hb_003189_020 Hb_046770_010--Hb_003189_020 Hb_005550_040 Hb_005550_040 Hb_046770_010--Hb_005550_040 Hb_105134_010 Hb_105134_010 Hb_046770_010--Hb_105134_010 Hb_074892_010 Hb_074892_010 Hb_000380_130--Hb_074892_010 Hb_000380_130--Hb_033622_020 Hb_001597_110 Hb_001597_110 Hb_000380_130--Hb_001597_110 Hb_000422_020 Hb_000422_020 Hb_008768_010--Hb_000422_020 Hb_000683_010 Hb_000683_010 Hb_008768_010--Hb_000683_010 Hb_004881_060 Hb_004881_060 Hb_008768_010--Hb_004881_060 Hb_025526_010 Hb_025526_010 Hb_008768_010--Hb_025526_010 Hb_000205_210 Hb_000205_210 Hb_008768_010--Hb_000205_210 Hb_109673_010--Hb_001545_270 Hb_033363_080 Hb_033363_080 Hb_109673_010--Hb_033363_080 Hb_004316_130 Hb_004316_130 Hb_109673_010--Hb_004316_130 Hb_032631_080 Hb_032631_080 Hb_109673_010--Hb_032631_080 Hb_031931_030 Hb_031931_030 Hb_029769_010--Hb_031931_030 Hb_008692_020 Hb_008692_020 Hb_029769_010--Hb_008692_020 Hb_010761_030 Hb_010761_030 Hb_029769_010--Hb_010761_030 Hb_002566_010 Hb_002566_010 Hb_029769_010--Hb_002566_010 Hb_029769_010--Hb_008768_010 Hb_000149_090 Hb_000149_090 Hb_029769_010--Hb_000149_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.91217 2.10164 8.69404 0.191226 0.129671
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.29665 0.466054 0.389682 59.6489 14.8193

CAGE analysis