Hb_001597_110

Information

Type -
Description -
Location Contig1597: 185786-186506
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14210: 165741-186347
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001597_110 0.0 - - -
2 Hb_074892_010 0.0761726101 - - Flavonol 3-sulfotransferase, putative [Ricinus communis]
3 Hb_033622_020 0.0840031929 - - lipid binding protein, putative [Ricinus communis]
4 Hb_000380_130 0.0956719068 - - Phenylalanine ammonia-lyase, putative [Ricinus communis]
5 Hb_006573_250 0.0988394793 - - PREDICTED: ABC transporter G family member 8 [Jatropha curcas]
6 Hb_001218_070 0.115723362 - - PREDICTED: sugar transport protein 5-like isoform X1 [Jatropha curcas]
7 Hb_000457_130 0.1171095036 - - hypothetical protein AALP_AA3G009100 [Arabis alpina]
8 Hb_046770_010 0.1205627816 - - conserved hypothetical protein [Ricinus communis]
9 Hb_009812_010 0.1277462689 - - ABC transporter family protein [Hevea brasiliensis]
10 Hb_001004_130 0.1307584646 - - PREDICTED: chalcone synthase 3 [Jatropha curcas]
11 Hb_135554_010 0.1358260111 - - Insulin-degrading enzyme, putative [Ricinus communis]
12 Hb_004310_170 0.1362477952 - - PREDICTED: protein mago nashi homolog [Jatropha curcas]
13 Hb_032631_080 0.137694609 - - PREDICTED: L-Ala-D/L-amino acid epimerase-like isoform X2 [Jatropha curcas]
14 Hb_000844_090 0.1388582648 - - PREDICTED: cytochrome P450 82C4-like [Jatropha curcas]
15 Hb_146930_010 0.1407163358 - - -
16 Hb_005550_040 0.1410015577 - - PREDICTED: epoxide hydrolase 4-like [Jatropha curcas]
17 Hb_001949_010 0.1411532733 - - PREDICTED: VQ motif-containing protein 11 [Jatropha curcas]
18 Hb_000751_050 0.1455246509 - - PREDICTED: extensin, partial [Solanum lycopersicum]
19 Hb_006916_020 0.149476581 - - Flavonol 4'-sulfotransferase, putative [Ricinus communis]
20 Hb_011576_010 0.1500579381 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]

Gene co-expression network

sample Hb_001597_110 Hb_001597_110 Hb_074892_010 Hb_074892_010 Hb_001597_110--Hb_074892_010 Hb_033622_020 Hb_033622_020 Hb_001597_110--Hb_033622_020 Hb_000380_130 Hb_000380_130 Hb_001597_110--Hb_000380_130 Hb_006573_250 Hb_006573_250 Hb_001597_110--Hb_006573_250 Hb_001218_070 Hb_001218_070 Hb_001597_110--Hb_001218_070 Hb_000457_130 Hb_000457_130 Hb_001597_110--Hb_000457_130 Hb_074892_010--Hb_000380_130 Hb_074892_010--Hb_033622_020 Hb_022815_020 Hb_022815_020 Hb_074892_010--Hb_022815_020 Hb_074892_010--Hb_001218_070 Hb_032631_080 Hb_032631_080 Hb_074892_010--Hb_032631_080 Hb_033622_020--Hb_000380_130 Hb_135554_010 Hb_135554_010 Hb_033622_020--Hb_135554_010 Hb_006970_100 Hb_006970_100 Hb_033622_020--Hb_006970_100 Hb_006651_010 Hb_006651_010 Hb_033622_020--Hb_006651_010 Hb_000380_130--Hb_001218_070 Hb_046770_010 Hb_046770_010 Hb_000380_130--Hb_046770_010 Hb_011671_420 Hb_011671_420 Hb_000380_130--Hb_011671_420 Hb_178703_010 Hb_178703_010 Hb_006573_250--Hb_178703_010 Hb_001004_130 Hb_001004_130 Hb_006573_250--Hb_001004_130 Hb_032223_020 Hb_032223_020 Hb_006573_250--Hb_032223_020 Hb_008376_020 Hb_008376_020 Hb_006573_250--Hb_008376_020 Hb_006573_250--Hb_032631_080 Hb_109673_010 Hb_109673_010 Hb_001218_070--Hb_109673_010 Hb_001218_070--Hb_046770_010 Hb_001545_270 Hb_001545_270 Hb_001218_070--Hb_001545_270 Hb_001218_070--Hb_011671_420 Hb_001218_070--Hb_033622_020 Hb_000465_180 Hb_000465_180 Hb_000457_130--Hb_000465_180 Hb_001300_140 Hb_001300_140 Hb_000457_130--Hb_001300_140 Hb_009812_010 Hb_009812_010 Hb_000457_130--Hb_009812_010 Hb_000844_090 Hb_000844_090 Hb_000457_130--Hb_000844_090 Hb_011576_010 Hb_011576_010 Hb_000457_130--Hb_011576_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.76706 1.95568 1.75445 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 13.0715 4.80747

CAGE analysis