Hb_006573_250

Information

Type -
Description -
Location Contig6573: 168147-169946
Sequence    

Annotation

kegg
ID pop:POPTR_0015s05680g
description ABC transporter family protein
nr
ID XP_012090161.1
description PREDICTED: ABC transporter G family member 8 [Jatropha curcas]
swissprot
ID Q9FLX5
description ABC transporter G family member 8 OS=Arabidopsis thaliana GN=ABCG8 PE=2 SV=1
trembl
ID A0A067JRT0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26035 PE=3 SV=1
Gene Ontology
ID GO:0016020
description abc transporter g family member 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52832: 167988-170120
cDNA
(Sanger)
(ID:Location)		 021_I12.ab1: 169385-170120 , 030_F07.ab1: 169458-170120

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006573_250 0.0 - - PREDICTED: ABC transporter G family member 8 [Jatropha curcas]
2 Hb_178703_010 0.0901600339 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
3 Hb_001004_130 0.091450106 - - PREDICTED: chalcone synthase 3 [Jatropha curcas]
4 Hb_001597_110 0.0988394793 - - -
5 Hb_032223_020 0.1000839118 - - ATP binding protein, putative [Ricinus communis]
6 Hb_008376_020 0.1032433168 - - hypothetical protein JCGZ_03321 [Jatropha curcas]
7 Hb_032631_080 0.1139387388 - - PREDICTED: L-Ala-D/L-amino acid epimerase-like isoform X2 [Jatropha curcas]
8 Hb_001545_270 0.114723587 - - laccase, putative [Ricinus communis]
9 Hb_005550_040 0.1223579981 - - PREDICTED: epoxide hydrolase 4-like [Jatropha curcas]
10 Hb_003189_020 0.1238190098 - - PREDICTED: probable glutathione S-transferase [Jatropha curcas]
11 Hb_046770_010 0.129394372 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001922_010 0.1308600639 - - PREDICTED: ABC transporter G family member 8 [Jatropha curcas]
13 Hb_000609_020 0.1336358425 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Jatropha curcas]
14 Hb_109673_010 0.1339789962 - - glutathione s-transferase, putative [Ricinus communis]
15 Hb_001218_070 0.134329766 - - PREDICTED: sugar transport protein 5-like isoform X1 [Jatropha curcas]
16 Hb_001949_010 0.1345118595 - - PREDICTED: VQ motif-containing protein 11 [Jatropha curcas]
17 Hb_000645_250 0.1352207568 - - PREDICTED: putative beta-D-xylosidase [Jatropha curcas]
18 Hb_004881_080 0.1364358556 - - PREDICTED: glycerol-3-phosphate acyltransferase 1 [Populus euphratica]
19 Hb_000847_120 0.1391549308 - - hypothetical protein JCGZ_15115 [Jatropha curcas]
20 Hb_006916_020 0.1395461409 - - Flavonol 4'-sulfotransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_006573_250 Hb_006573_250 Hb_178703_010 Hb_178703_010 Hb_006573_250--Hb_178703_010 Hb_001004_130 Hb_001004_130 Hb_006573_250--Hb_001004_130 Hb_001597_110 Hb_001597_110 Hb_006573_250--Hb_001597_110 Hb_032223_020 Hb_032223_020 Hb_006573_250--Hb_032223_020 Hb_008376_020 Hb_008376_020 Hb_006573_250--Hb_008376_020 Hb_032631_080 Hb_032631_080 Hb_006573_250--Hb_032631_080 Hb_178703_010--Hb_032223_020 Hb_005550_040 Hb_005550_040 Hb_178703_010--Hb_005550_040 Hb_003189_020 Hb_003189_020 Hb_178703_010--Hb_003189_020 Hb_001949_010 Hb_001949_010 Hb_178703_010--Hb_001949_010 Hb_000751_050 Hb_000751_050 Hb_178703_010--Hb_000751_050 Hb_000844_090 Hb_000844_090 Hb_001004_130--Hb_000844_090 Hb_001004_130--Hb_008376_020 Hb_079394_010 Hb_079394_010 Hb_001004_130--Hb_079394_010 Hb_001005_210 Hb_001005_210 Hb_001004_130--Hb_001005_210 Hb_001300_140 Hb_001300_140 Hb_001004_130--Hb_001300_140 Hb_074892_010 Hb_074892_010 Hb_001597_110--Hb_074892_010 Hb_033622_020 Hb_033622_020 Hb_001597_110--Hb_033622_020 Hb_000380_130 Hb_000380_130 Hb_001597_110--Hb_000380_130 Hb_001218_070 Hb_001218_070 Hb_001597_110--Hb_001218_070 Hb_000457_130 Hb_000457_130 Hb_001597_110--Hb_000457_130 Hb_032223_020--Hb_008376_020 Hb_000645_250 Hb_000645_250 Hb_032223_020--Hb_000645_250 Hb_032223_020--Hb_001949_010 Hb_032223_020--Hb_005550_040 Hb_000609_020 Hb_000609_020 Hb_008376_020--Hb_000609_020 Hb_000847_120 Hb_000847_120 Hb_008376_020--Hb_000847_120 Hb_000000_200 Hb_000000_200 Hb_008376_020--Hb_000000_200 Hb_008376_020--Hb_000645_250 Hb_032631_080--Hb_001005_210 Hb_000075_030 Hb_000075_030 Hb_032631_080--Hb_000075_030 Hb_001922_010 Hb_001922_010 Hb_032631_080--Hb_001922_010 Hb_001691_060 Hb_001691_060 Hb_032631_080--Hb_001691_060 Hb_109673_010 Hb_109673_010 Hb_032631_080--Hb_109673_010 Hb_004881_080 Hb_004881_080 Hb_032631_080--Hb_004881_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0111606 0.483658 3.92561 4.53653 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 20.9518 6.35245

CAGE analysis