Hb_000609_020

Information

Type -
Description -
Location Contig609: 30416-37272
Sequence    

Annotation

kegg
ID pop:POPTR_0018s12440g
description POPTRDRAFT_578835; hypothetical protein
nr
ID XP_012081236.1
description PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Jatropha curcas]
swissprot
ID C0LGQ5
description LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1
trembl
ID B9IMM6
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s12440g PE=4 SV=2
Gene Ontology
ID GO:0005515
description lrr receptor-like serine threonine-protein kinase gso2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50880: 32226-33086
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000609_020 0.0 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Jatropha curcas]
2 Hb_000000_200 0.0544508639 - - PREDICTED: protein TRANSPARENT TESTA 12 [Jatropha curcas]
3 Hb_008376_020 0.0587038555 - - hypothetical protein JCGZ_03321 [Jatropha curcas]
4 Hb_000847_120 0.0797885525 - - hypothetical protein JCGZ_15115 [Jatropha curcas]
5 Hb_010334_050 0.0901501255 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000645_250 0.0991612504 - - PREDICTED: putative beta-D-xylosidase [Jatropha curcas]
7 Hb_099157_010 0.1109807622 - - PREDICTED: uncharacterized protein LOC105630881 [Jatropha curcas]
8 Hb_000836_260 0.1111909892 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
9 Hb_003160_050 0.1244105205 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
10 Hb_001004_130 0.1279754825 - - PREDICTED: chalcone synthase 3 [Jatropha curcas]
11 Hb_006573_250 0.1336358425 - - PREDICTED: ABC transporter G family member 8 [Jatropha curcas]
12 Hb_168319_060 0.1343902093 - - PREDICTED: cytochrome P450 CYP749A22-like [Populus euphratica]
13 Hb_032223_020 0.1360112216 - - ATP binding protein, putative [Ricinus communis]
14 Hb_001300_140 0.1363650862 - - -
15 Hb_000751_060 0.1370550594 - - PREDICTED: extensin-2-like, partial [Sesamum indicum]
16 Hb_004010_090 0.137176643 - - ATP binding protein, putative [Ricinus communis]
17 Hb_116190_010 0.147391585 - - PREDICTED: uncharacterized protein LOC105118535 [Populus euphratica]
18 Hb_015978_010 0.1477179685 - - PREDICTED: probable beta-D-xylosidase 2 [Populus euphratica]
19 Hb_079394_010 0.1478367895 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
20 Hb_006916_020 0.1483939823 - - Flavonol 4'-sulfotransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000609_020 Hb_000609_020 Hb_000000_200 Hb_000000_200 Hb_000609_020--Hb_000000_200 Hb_008376_020 Hb_008376_020 Hb_000609_020--Hb_008376_020 Hb_000847_120 Hb_000847_120 Hb_000609_020--Hb_000847_120 Hb_010334_050 Hb_010334_050 Hb_000609_020--Hb_010334_050 Hb_000645_250 Hb_000645_250 Hb_000609_020--Hb_000645_250 Hb_099157_010 Hb_099157_010 Hb_000609_020--Hb_099157_010 Hb_000000_200--Hb_010334_050 Hb_000000_200--Hb_008376_020 Hb_000000_200--Hb_000847_120 Hb_000000_200--Hb_000645_250 Hb_000000_200--Hb_099157_010 Hb_008376_020--Hb_000847_120 Hb_001004_130 Hb_001004_130 Hb_008376_020--Hb_001004_130 Hb_008376_020--Hb_000645_250 Hb_006573_250 Hb_006573_250 Hb_008376_020--Hb_006573_250 Hb_000836_260 Hb_000836_260 Hb_000847_120--Hb_000836_260 Hb_000847_120--Hb_000645_250 Hb_000751_070 Hb_000751_070 Hb_000847_120--Hb_000751_070 Hb_116190_010 Hb_116190_010 Hb_010334_050--Hb_116190_010 Hb_000373_060 Hb_000373_060 Hb_010334_050--Hb_000373_060 Hb_003861_090 Hb_003861_090 Hb_010334_050--Hb_003861_090 Hb_010334_050--Hb_008376_020 Hb_000751_060 Hb_000751_060 Hb_000645_250--Hb_000751_060 Hb_060152_010 Hb_060152_010 Hb_000645_250--Hb_060152_010 Hb_000645_250--Hb_000751_070 Hb_099157_010--Hb_008376_020 Hb_099157_010--Hb_000847_120 Hb_099157_010--Hb_000645_250 Hb_099157_010--Hb_000836_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0226553 0.153977 0.19638 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.428342 0.168111

CAGE analysis