Hb_000373_060

Information

Type -
Description -
Location Contig373: 73153-73884
Sequence    

Annotation

kegg
ID ath:AT1G21310
description EXT3; extensin 3
nr
ID XP_010477392.1
description PREDICTED: extensin-3 [Camelina sativa]
swissprot
ID Q9FS16
description Extensin-3 OS=Arabidopsis thaliana GN=EXT3 PE=2 SV=3
trembl
ID A0A087HQ17
description Uncharacterized protein OS=Arabis alpina GN=AALP_AA1G230000 PE=4 SV=1
Gene Ontology
ID GO:0005199
description extensin 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 004_H18.ab1: 73551-73835 , 012_C09.ab1: 73556-73915 , 022_P17.ab1: 73556-73731 , 023_G17.ab1: 73551-73791 , 024_I01.ab1: 73554-73753 , 028_A01.ab1: 73553-73752 , 028_B20.ab1: 73551-73831

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000373_060 0.0 - - PREDICTED: extensin-3 [Camelina sativa]
2 Hb_003861_090 0.0314374551 - - adenylsulfate kinase, putative [Ricinus communis]
3 Hb_116190_010 0.0497919889 - - PREDICTED: uncharacterized protein LOC105118535 [Populus euphratica]
4 Hb_010334_050 0.099424582 - - conserved hypothetical protein [Ricinus communis]
5 Hb_006499_020 0.1100068668 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
6 Hb_000226_110 0.1137160235 - - -
7 Hb_000645_250 0.1245212331 - - PREDICTED: putative beta-D-xylosidase [Jatropha curcas]
8 Hb_000751_060 0.1273376558 - - PREDICTED: extensin-2-like, partial [Sesamum indicum]
9 Hb_060152_010 0.1304068103 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]
10 Hb_003858_080 0.1313762754 - - Germin-like protein 2 [Theobroma cacao]
11 Hb_000000_200 0.14264516 - - PREDICTED: protein TRANSPARENT TESTA 12 [Jatropha curcas]
12 Hb_015978_010 0.1464960617 - - PREDICTED: probable beta-D-xylosidase 2 [Populus euphratica]
13 Hb_032223_020 0.14889973 - - ATP binding protein, putative [Ricinus communis]
14 Hb_168561_010 0.1524431366 - - PREDICTED: notchless protein homolog [Jatropha curcas]
15 Hb_000609_020 0.1526695321 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Jatropha curcas]
16 Hb_001675_040 0.1534280063 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001369_270 0.154493114 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
18 Hb_168319_060 0.1602168867 - - PREDICTED: cytochrome P450 CYP749A22-like [Populus euphratica]
19 Hb_001916_030 0.1712892849 - - PREDICTED: uncharacterized protein LOC105802975 [Gossypium raimondii]
20 Hb_011849_020 0.1717824729 - - dioxygenase family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_000373_060 Hb_000373_060 Hb_003861_090 Hb_003861_090 Hb_000373_060--Hb_003861_090 Hb_116190_010 Hb_116190_010 Hb_000373_060--Hb_116190_010 Hb_010334_050 Hb_010334_050 Hb_000373_060--Hb_010334_050 Hb_006499_020 Hb_006499_020 Hb_000373_060--Hb_006499_020 Hb_000226_110 Hb_000226_110 Hb_000373_060--Hb_000226_110 Hb_000645_250 Hb_000645_250 Hb_000373_060--Hb_000645_250 Hb_003861_090--Hb_116190_010 Hb_003861_090--Hb_006499_020 Hb_003858_080 Hb_003858_080 Hb_003861_090--Hb_003858_080 Hb_003861_090--Hb_000226_110 Hb_003861_090--Hb_010334_050 Hb_116190_010--Hb_006499_020 Hb_116190_010--Hb_010334_050 Hb_116190_010--Hb_000226_110 Hb_168561_010 Hb_168561_010 Hb_116190_010--Hb_168561_010 Hb_000000_200 Hb_000000_200 Hb_010334_050--Hb_000000_200 Hb_000609_020 Hb_000609_020 Hb_010334_050--Hb_000609_020 Hb_008376_020 Hb_008376_020 Hb_010334_050--Hb_008376_020 Hb_006499_020--Hb_168561_010 Hb_006499_020--Hb_000226_110 Hb_000639_010 Hb_000639_010 Hb_006499_020--Hb_000639_010 Hb_026419_010 Hb_026419_010 Hb_000226_110--Hb_026419_010 Hb_001369_270 Hb_001369_270 Hb_000226_110--Hb_001369_270 Hb_000751_060 Hb_000751_060 Hb_000645_250--Hb_000751_060 Hb_000847_120 Hb_000847_120 Hb_000645_250--Hb_000847_120 Hb_000645_250--Hb_008376_020 Hb_060152_010 Hb_060152_010 Hb_000645_250--Hb_060152_010 Hb_000751_070 Hb_000751_070 Hb_000645_250--Hb_000751_070 Hb_000645_250--Hb_000609_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.38404 1357.4 3310.28 0 1.24176
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.590732 1.21179 4456.89 2786.36

CAGE analysis