Hb_000847_120

Information

Type -
Description -
Location Contig847: 150726-151043
Sequence    

Annotation

kegg
ID rcu:RCOM_1626730
description lipid binding protein, putative
nr
ID KDP45250.1
description hypothetical protein JCGZ_15115 [Jatropha curcas]
swissprot
ID Q8W453
description Putative lipid-transfer protein DIR1 OS=Arabidopsis thaliana GN=DIR1 PE=1 SV=1
trembl
ID A0A067LKP2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15115 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60260: 150663-151264
cDNA
(Sanger)
(ID:Location)		 016_L15.ab1: 150681-151166 , 028_E09.ab1: 150675-151124 , 031_P12.ab1: 150677-151124 , 033_F23.ab1: 150673-151167 , 033_P22.ab1: 150675-151124 , 041_K20.ab1: 150663-151128 , 049_D15.ab1: 150675-151124

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000847_120 0.0 - - hypothetical protein JCGZ_15115 [Jatropha curcas]
2 Hb_008376_020 0.0630462917 - - hypothetical protein JCGZ_03321 [Jatropha curcas]
3 Hb_000836_260 0.0762528841 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
4 Hb_000609_020 0.0797885525 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Jatropha curcas]
5 Hb_000645_250 0.0848576022 - - PREDICTED: putative beta-D-xylosidase [Jatropha curcas]
6 Hb_000000_200 0.1007307738 - - PREDICTED: protein TRANSPARENT TESTA 12 [Jatropha curcas]
7 Hb_000751_070 0.1059134832 - - -
8 Hb_001300_140 0.1070976975 - - -
9 Hb_004943_010 0.1101994956 - - cationic amino acid transporter, putative [Ricinus communis]
10 Hb_168319_060 0.1103322717 - - PREDICTED: cytochrome P450 CYP749A22-like [Populus euphratica]
11 Hb_000751_060 0.1167576389 - - PREDICTED: extensin-2-like, partial [Sesamum indicum]
12 Hb_099157_010 0.11921323 - - PREDICTED: uncharacterized protein LOC105630881 [Jatropha curcas]
13 Hb_060152_010 0.1210261961 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]
14 Hb_002379_060 0.1234387546 - - PREDICTED: MACPF domain-containing protein At1g14780 [Jatropha curcas]
15 Hb_019278_010 0.1299797792 - - PREDICTED: uncharacterized protein LOC105638282 [Jatropha curcas]
16 Hb_001004_130 0.1315104394 - - PREDICTED: chalcone synthase 3 [Jatropha curcas]
17 Hb_004010_090 0.1331788748 - - ATP binding protein, putative [Ricinus communis]
18 Hb_000087_120 0.1341287383 - - AMP dependent CoA ligase, putative [Ricinus communis]
19 Hb_010334_050 0.1380025387 - - conserved hypothetical protein [Ricinus communis]
20 Hb_006573_250 0.1391549308 - - PREDICTED: ABC transporter G family member 8 [Jatropha curcas]

Gene co-expression network

sample Hb_000847_120 Hb_000847_120 Hb_008376_020 Hb_008376_020 Hb_000847_120--Hb_008376_020 Hb_000836_260 Hb_000836_260 Hb_000847_120--Hb_000836_260 Hb_000609_020 Hb_000609_020 Hb_000847_120--Hb_000609_020 Hb_000645_250 Hb_000645_250 Hb_000847_120--Hb_000645_250 Hb_000000_200 Hb_000000_200 Hb_000847_120--Hb_000000_200 Hb_000751_070 Hb_000751_070 Hb_000847_120--Hb_000751_070 Hb_008376_020--Hb_000609_020 Hb_001004_130 Hb_001004_130 Hb_008376_020--Hb_001004_130 Hb_008376_020--Hb_000000_200 Hb_008376_020--Hb_000645_250 Hb_006573_250 Hb_006573_250 Hb_008376_020--Hb_006573_250 Hb_001300_140 Hb_001300_140 Hb_000836_260--Hb_001300_140 Hb_009150_060 Hb_009150_060 Hb_000836_260--Hb_009150_060 Hb_004943_010 Hb_004943_010 Hb_000836_260--Hb_004943_010 Hb_000836_260--Hb_008376_020 Hb_000753_180 Hb_000753_180 Hb_000836_260--Hb_000753_180 Hb_000609_020--Hb_000000_200 Hb_010334_050 Hb_010334_050 Hb_000609_020--Hb_010334_050 Hb_000609_020--Hb_000645_250 Hb_099157_010 Hb_099157_010 Hb_000609_020--Hb_099157_010 Hb_000751_060 Hb_000751_060 Hb_000645_250--Hb_000751_060 Hb_060152_010 Hb_060152_010 Hb_000645_250--Hb_060152_010 Hb_000645_250--Hb_000751_070 Hb_000000_200--Hb_010334_050 Hb_000000_200--Hb_000645_250 Hb_000000_200--Hb_099157_010 Hb_000567_150 Hb_000567_150 Hb_000751_070--Hb_000567_150 Hb_146930_010 Hb_146930_010 Hb_000751_070--Hb_146930_010 Hb_000751_070--Hb_060152_010 Hb_000751_070--Hb_000751_060 Hb_001288_050 Hb_001288_050 Hb_000751_070--Hb_001288_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.60327 66.6029 314.865 342.339 1.07195 0.383108
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 885.25 488.686

CAGE analysis