Hb_004943_010

Information

Type -
Description -
Location Contig4943: 17372-19091
Sequence    

Annotation

kegg
ID rcu:RCOM_1093080
description cationic amino acid transporter, putative
nr
ID XP_002526615.1
description cationic amino acid transporter, putative [Ricinus communis]
swissprot
ID P18581
description Cationic amino acid transporter 2 OS=Mus musculus GN=Slc7a2 PE=1 SV=3
trembl
ID B9SKU6
description Cationic amino acid transporter, putative OS=Ricinus communis GN=RCOM_1093080 PE=4 SV=1
Gene Ontology
ID GO:0005737
description cationic amino acid transporter 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45417: 17226-37275
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004943_010 0.0 - - cationic amino acid transporter, putative [Ricinus communis]
2 Hb_168319_060 0.091015651 - - PREDICTED: cytochrome P450 CYP749A22-like [Populus euphratica]
3 Hb_000836_260 0.093792257 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
4 Hb_007850_110 0.1001022412 - - MADS-box transcription factor 3 [Hevea brasiliensis]
5 Hb_002622_010 0.1005575981 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR [Jatropha curcas]
6 Hb_000258_210 0.1009941454 - - prenyl-dependent CAAX protease, putative [Ricinus communis]
7 Hb_001109_130 0.1076872625 - - PREDICTED: coiled-coil domain-containing protein 136 isoform X1 [Jatropha curcas]
8 Hb_017098_050 0.1081238655 - - hypothetical protein POPTR_0001s03540g [Populus trichocarpa]
9 Hb_000847_120 0.1101994956 - - hypothetical protein JCGZ_15115 [Jatropha curcas]
10 Hb_002379_060 0.1113628313 - - PREDICTED: MACPF domain-containing protein At1g14780 [Jatropha curcas]
11 Hb_019278_010 0.1239371865 - - PREDICTED: uncharacterized protein LOC105638282 [Jatropha curcas]
12 Hb_000866_190 0.1286547755 - - transcription factor, putative [Ricinus communis]
13 Hb_014967_020 0.1316517285 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
14 Hb_007875_020 0.1323355052 - - PREDICTED: pyruvate kinase, cytosolic isozyme-like [Jatropha curcas]
15 Hb_060152_010 0.1330748089 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]
16 Hb_000087_120 0.1341546876 - - AMP dependent CoA ligase, putative [Ricinus communis]
17 Hb_001300_140 0.1349250435 - - -
18 Hb_001660_050 0.1352210208 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Eucalyptus grandis]
19 Hb_000751_070 0.1375204734 - - -
20 Hb_065521_010 0.1381076891 - - PREDICTED: probable metal-nicotianamine transporter YSL5 [Jatropha curcas]

Gene co-expression network

sample Hb_004943_010 Hb_004943_010 Hb_168319_060 Hb_168319_060 Hb_004943_010--Hb_168319_060 Hb_000836_260 Hb_000836_260 Hb_004943_010--Hb_000836_260 Hb_007850_110 Hb_007850_110 Hb_004943_010--Hb_007850_110 Hb_002622_010 Hb_002622_010 Hb_004943_010--Hb_002622_010 Hb_000258_210 Hb_000258_210 Hb_004943_010--Hb_000258_210 Hb_001109_130 Hb_001109_130 Hb_004943_010--Hb_001109_130 Hb_007875_020 Hb_007875_020 Hb_168319_060--Hb_007875_020 Hb_065521_010 Hb_065521_010 Hb_168319_060--Hb_065521_010 Hb_060152_010 Hb_060152_010 Hb_168319_060--Hb_060152_010 Hb_029510_090 Hb_029510_090 Hb_168319_060--Hb_029510_090 Hb_000254_060 Hb_000254_060 Hb_168319_060--Hb_000254_060 Hb_001300_140 Hb_001300_140 Hb_000836_260--Hb_001300_140 Hb_000847_120 Hb_000847_120 Hb_000836_260--Hb_000847_120 Hb_009150_060 Hb_009150_060 Hb_000836_260--Hb_009150_060 Hb_008376_020 Hb_008376_020 Hb_000836_260--Hb_008376_020 Hb_000753_180 Hb_000753_180 Hb_000836_260--Hb_000753_180 Hb_006469_090 Hb_006469_090 Hb_007850_110--Hb_006469_090 Hb_017098_050 Hb_017098_050 Hb_007850_110--Hb_017098_050 Hb_007850_110--Hb_001109_130 Hb_002635_010 Hb_002635_010 Hb_007850_110--Hb_002635_010 Hb_004607_160 Hb_004607_160 Hb_007850_110--Hb_004607_160 Hb_000130_480 Hb_000130_480 Hb_007850_110--Hb_000130_480 Hb_001660_050 Hb_001660_050 Hb_002622_010--Hb_001660_050 Hb_001607_070 Hb_001607_070 Hb_002622_010--Hb_001607_070 Hb_009659_040 Hb_009659_040 Hb_002622_010--Hb_009659_040 Hb_000203_080 Hb_000203_080 Hb_002622_010--Hb_000203_080 Hb_029576_080 Hb_029576_080 Hb_002622_010--Hb_029576_080 Hb_014967_020 Hb_014967_020 Hb_000258_210--Hb_014967_020 Hb_000258_210--Hb_001109_130 Hb_000258_210--Hb_065521_010 Hb_009641_040 Hb_009641_040 Hb_000258_210--Hb_009641_040 Hb_000258_210--Hb_007875_020 Hb_001109_130--Hb_017098_050 Hb_010880_010 Hb_010880_010 Hb_001109_130--Hb_010880_010 Hb_005496_170 Hb_005496_170 Hb_001109_130--Hb_005496_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.233996 0.497913 0.563684 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.06214 0.870657

CAGE analysis