Hb_000258_210

Information

Type -
Description -
Location Contig258: 167563-171135
Sequence    

Annotation

kegg
ID rcu:RCOM_0836320
description prenyl-dependent CAAX protease, putative
nr
ID XP_002522426.1
description prenyl-dependent CAAX protease, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S8V7
description Prenyl-dependent CAAX protease, putative OS=Ricinus communis GN=RCOM_0836320 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000258_210 0.0 - - prenyl-dependent CAAX protease, putative [Ricinus communis]
2 Hb_014967_020 0.0393812787 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
3 Hb_001109_130 0.0882534322 - - PREDICTED: coiled-coil domain-containing protein 136 isoform X1 [Jatropha curcas]
4 Hb_065521_010 0.0924776113 - - PREDICTED: probable metal-nicotianamine transporter YSL5 [Jatropha curcas]
5 Hb_004943_010 0.1009941454 - - cationic amino acid transporter, putative [Ricinus communis]
6 Hb_009641_040 0.1047435757 - - PREDICTED: uncharacterized protein LOC105633355 [Jatropha curcas]
7 Hb_007875_020 0.1058196128 - - PREDICTED: pyruvate kinase, cytosolic isozyme-like [Jatropha curcas]
8 Hb_007850_110 0.1094219936 - - MADS-box transcription factor 3 [Hevea brasiliensis]
9 Hb_059000_010 0.1105250017 - - hypothetical protein JCGZ_17736 [Jatropha curcas]
10 Hb_002622_010 0.1138548687 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR [Jatropha curcas]
11 Hb_000866_190 0.1140797803 - - transcription factor, putative [Ricinus communis]
12 Hb_015306_010 0.1156066045 - - PREDICTED: uncharacterized protein LOC105636357 [Jatropha curcas]
13 Hb_168319_060 0.119167145 - - PREDICTED: cytochrome P450 CYP749A22-like [Populus euphratica]
14 Hb_002448_020 0.1194171991 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
15 Hb_004122_060 0.1214562123 - - PREDICTED: uncharacterized acetyltransferase At3g50280-like [Jatropha curcas]
16 Hb_017098_050 0.1225483212 - - hypothetical protein POPTR_0001s03540g [Populus trichocarpa]
17 Hb_001778_040 0.1226100536 - - hypothetical protein VITISV_021035 [Vitis vinifera]
18 Hb_004607_160 0.1232636289 - - PREDICTED: uncharacterized protein LOC105134931 [Populus euphratica]
19 Hb_007386_030 0.123715535 - - PREDICTED: formin-like protein 2 [Jatropha curcas]
20 Hb_009554_030 0.1246843794 - - PREDICTED: chlorophyll synthase, chloroplastic [Prunus mume]

Gene co-expression network

sample Hb_000258_210 Hb_000258_210 Hb_014967_020 Hb_014967_020 Hb_000258_210--Hb_014967_020 Hb_001109_130 Hb_001109_130 Hb_000258_210--Hb_001109_130 Hb_065521_010 Hb_065521_010 Hb_000258_210--Hb_065521_010 Hb_004943_010 Hb_004943_010 Hb_000258_210--Hb_004943_010 Hb_009641_040 Hb_009641_040 Hb_000258_210--Hb_009641_040 Hb_007875_020 Hb_007875_020 Hb_000258_210--Hb_007875_020 Hb_014967_020--Hb_009641_040 Hb_014967_020--Hb_065521_010 Hb_059000_010 Hb_059000_010 Hb_014967_020--Hb_059000_010 Hb_014967_020--Hb_007875_020 Hb_004607_160 Hb_004607_160 Hb_014967_020--Hb_004607_160 Hb_017098_050 Hb_017098_050 Hb_001109_130--Hb_017098_050 Hb_010880_010 Hb_010880_010 Hb_001109_130--Hb_010880_010 Hb_007850_110 Hb_007850_110 Hb_001109_130--Hb_007850_110 Hb_001109_130--Hb_004943_010 Hb_005496_170 Hb_005496_170 Hb_001109_130--Hb_005496_170 Hb_065521_010--Hb_007875_020 Hb_029510_090 Hb_029510_090 Hb_065521_010--Hb_029510_090 Hb_002448_020 Hb_002448_020 Hb_065521_010--Hb_002448_020 Hb_168319_060 Hb_168319_060 Hb_065521_010--Hb_168319_060 Hb_007386_030 Hb_007386_030 Hb_065521_010--Hb_007386_030 Hb_004943_010--Hb_168319_060 Hb_000836_260 Hb_000836_260 Hb_004943_010--Hb_000836_260 Hb_004943_010--Hb_007850_110 Hb_002622_010 Hb_002622_010 Hb_004943_010--Hb_002622_010 Hb_007237_080 Hb_007237_080 Hb_009641_040--Hb_007237_080 Hb_003894_180 Hb_003894_180 Hb_009641_040--Hb_003894_180 Hb_004307_070 Hb_004307_070 Hb_009641_040--Hb_004307_070 Hb_003633_170 Hb_003633_170 Hb_009641_040--Hb_003633_170 Hb_007017_100 Hb_007017_100 Hb_007875_020--Hb_007017_100 Hb_007875_020--Hb_007386_030 Hb_007875_020--Hb_029510_090 Hb_007875_020--Hb_168319_060 Hb_007875_020--Hb_002448_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.256222 0.318982 0.57175 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.614887 0.590136

CAGE analysis