Hb_003894_180

Information

Type -
Description -
Location Contig3894: 113080-115444
Sequence    

Annotation

kegg
ID zma:100502416
description uncharacterized LOC100502416
nr
ID XP_009799063.1
description PREDICTED: uncharacterized protein LOC104245193, partial [Nicotiana sylvestris]
swissprot
ID -
description -
trembl
ID W9S8P4
description E3 ubiquitin-protein ligase UPL6 OS=Morus notabilis GN=L484_005974 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003894_180 0.0 - - PREDICTED: uncharacterized protein LOC104245193, partial [Nicotiana sylvestris]
2 Hb_007370_010 0.0678005944 - - PREDICTED: indole-3-pyruvate monooxygenase YUCCA6 [Jatropha curcas]
3 Hb_000152_570 0.0729014038 - - 21 kDa protein precursor, putative [Ricinus communis]
4 Hb_004466_090 0.08582707 - - conserved hypothetical protein [Ricinus communis]
5 Hb_003633_170 0.0903227383 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002284_060 0.0924750155 - - sugar transporter, putative [Ricinus communis]
7 Hb_000103_300 0.0948133232 - - PREDICTED: perakine reductase-like [Jatropha curcas]
8 Hb_007894_080 0.0951209482 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000193_070 0.1024395691 - - hypothetical protein JCGZ_25373 [Jatropha curcas]
10 Hb_000017_140 0.1024557136 - - polygalacturonase, putative [Ricinus communis]
11 Hb_033772_060 0.1043117783 - - conserved hypothetical protein [Ricinus communis]
12 Hb_169077_030 0.104912303 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein RF9 [Jatropha curcas]
13 Hb_031224_010 0.105168644 - - -
14 Hb_002391_240 0.1066824931 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000152_880 0.1081263734 - - -
16 Hb_000473_100 0.110733952 - - PREDICTED: ultraviolet-B receptor UVR8 [Jatropha curcas]
17 Hb_004374_030 0.1115296996 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
18 Hb_009641_040 0.1134469278 - - PREDICTED: uncharacterized protein LOC105633355 [Jatropha curcas]
19 Hb_002095_020 0.114851465 - - PREDICTED: glutamate receptor 3.4-like isoform X1 [Jatropha curcas]
20 Hb_002518_230 0.1162413459 - - -

Gene co-expression network

sample Hb_003894_180 Hb_003894_180 Hb_007370_010 Hb_007370_010 Hb_003894_180--Hb_007370_010 Hb_000152_570 Hb_000152_570 Hb_003894_180--Hb_000152_570 Hb_004466_090 Hb_004466_090 Hb_003894_180--Hb_004466_090 Hb_003633_170 Hb_003633_170 Hb_003894_180--Hb_003633_170 Hb_002284_060 Hb_002284_060 Hb_003894_180--Hb_002284_060 Hb_000103_300 Hb_000103_300 Hb_003894_180--Hb_000103_300 Hb_007370_010--Hb_003633_170 Hb_169077_030 Hb_169077_030 Hb_007370_010--Hb_169077_030 Hb_007370_010--Hb_000152_570 Hb_031224_010 Hb_031224_010 Hb_007370_010--Hb_031224_010 Hb_007370_010--Hb_000103_300 Hb_000152_570--Hb_000103_300 Hb_000193_070 Hb_000193_070 Hb_000152_570--Hb_000193_070 Hb_000152_570--Hb_002284_060 Hb_002391_240 Hb_002391_240 Hb_000152_570--Hb_002391_240 Hb_004374_030 Hb_004374_030 Hb_004466_090--Hb_004374_030 Hb_016277_030 Hb_016277_030 Hb_004466_090--Hb_016277_030 Hb_000784_060 Hb_000784_060 Hb_004466_090--Hb_000784_060 Hb_002518_230 Hb_002518_230 Hb_004466_090--Hb_002518_230 Hb_004466_090--Hb_000152_570 Hb_004032_190 Hb_004032_190 Hb_004466_090--Hb_004032_190 Hb_003633_170--Hb_031224_010 Hb_002566_020 Hb_002566_020 Hb_003633_170--Hb_002566_020 Hb_008304_050 Hb_008304_050 Hb_003633_170--Hb_008304_050 Hb_004893_010 Hb_004893_010 Hb_003633_170--Hb_004893_010 Hb_002284_060--Hb_000103_300 Hb_002284_060--Hb_000193_070 Hb_002284_060--Hb_004466_090 Hb_002284_060--Hb_002391_240 Hb_000103_300--Hb_000193_070 Hb_000103_300--Hb_002391_240 Hb_006154_010 Hb_006154_010 Hb_000103_300--Hb_006154_010 Hb_000103_300--Hb_169077_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0301206 0.0562859 0.163838 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.054164 0.112988

CAGE analysis