Hb_002518_230

Information

Type -
Description -
Location Contig2518: 195756-196475
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26294: 194969-195080
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002518_230 0.0 - - -
2 Hb_004466_090 0.0809269577 - - conserved hypothetical protein [Ricinus communis]
3 Hb_012395_060 0.0937130099 - - PREDICTED: actin-related protein 2/3 complex subunit 2B [Jatropha curcas]
4 Hb_000193_070 0.0952037939 - - hypothetical protein JCGZ_25373 [Jatropha curcas]
5 Hb_000152_570 0.0997705352 - - 21 kDa protein precursor, putative [Ricinus communis]
6 Hb_004374_030 0.1026919512 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
7 Hb_000017_140 0.1034125651 - - polygalacturonase, putative [Ricinus communis]
8 Hb_001269_660 0.1062428803 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 2 [Jatropha curcas]
9 Hb_002391_240 0.1088635837 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000784_060 0.1101170531 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002284_060 0.1102886003 - - sugar transporter, putative [Ricinus communis]
12 Hb_002119_110 0.1106872512 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 28 [Jatropha curcas]
13 Hb_016277_030 0.1140577643 - - hypothetical protein JCGZ_16973 [Jatropha curcas]
14 Hb_003894_180 0.1162413459 - - PREDICTED: uncharacterized protein LOC104245193, partial [Nicotiana sylvestris]
15 Hb_169077_030 0.1175122247 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein RF9 [Jatropha curcas]
16 Hb_007370_010 0.1183667714 - - PREDICTED: indole-3-pyruvate monooxygenase YUCCA6 [Jatropha curcas]
17 Hb_004032_190 0.1221515175 - - PREDICTED: probable cellulose synthase A catalytic subunit 3 [UDP-forming] isoform X1 [Jatropha curcas]
18 Hb_000103_300 0.1258839103 - - PREDICTED: perakine reductase-like [Jatropha curcas]
19 Hb_047612_010 0.1266840791 - - glutamine amidotransferase class-I domain-containing family protein [Populus trichocarpa]
20 Hb_002374_510 0.1276930602 - - Esterase precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_002518_230 Hb_002518_230 Hb_004466_090 Hb_004466_090 Hb_002518_230--Hb_004466_090 Hb_012395_060 Hb_012395_060 Hb_002518_230--Hb_012395_060 Hb_000193_070 Hb_000193_070 Hb_002518_230--Hb_000193_070 Hb_000152_570 Hb_000152_570 Hb_002518_230--Hb_000152_570 Hb_004374_030 Hb_004374_030 Hb_002518_230--Hb_004374_030 Hb_000017_140 Hb_000017_140 Hb_002518_230--Hb_000017_140 Hb_004466_090--Hb_004374_030 Hb_016277_030 Hb_016277_030 Hb_004466_090--Hb_016277_030 Hb_000784_060 Hb_000784_060 Hb_004466_090--Hb_000784_060 Hb_004466_090--Hb_000152_570 Hb_004032_190 Hb_004032_190 Hb_004466_090--Hb_004032_190 Hb_169077_030 Hb_169077_030 Hb_012395_060--Hb_169077_030 Hb_004804_010 Hb_004804_010 Hb_012395_060--Hb_004804_010 Hb_001269_660 Hb_001269_660 Hb_012395_060--Hb_001269_660 Hb_001534_140 Hb_001534_140 Hb_012395_060--Hb_001534_140 Hb_138585_010 Hb_138585_010 Hb_012395_060--Hb_138585_010 Hb_012395_060--Hb_000152_570 Hb_000193_070--Hb_000152_570 Hb_002391_240 Hb_002391_240 Hb_000193_070--Hb_002391_240 Hb_000103_300 Hb_000103_300 Hb_000193_070--Hb_000103_300 Hb_002284_060 Hb_002284_060 Hb_000193_070--Hb_002284_060 Hb_006154_010 Hb_006154_010 Hb_000193_070--Hb_006154_010 Hb_000193_070--Hb_169077_030 Hb_000152_570--Hb_000103_300 Hb_000152_570--Hb_002284_060 Hb_000152_570--Hb_002391_240 Hb_003894_180 Hb_003894_180 Hb_000152_570--Hb_003894_180 Hb_007370_010 Hb_007370_010 Hb_000152_570--Hb_007370_010 Hb_004374_030--Hb_016277_030 Hb_004374_030--Hb_000784_060 Hb_000963_120 Hb_000963_120 Hb_004374_030--Hb_000963_120 Hb_002119_110 Hb_002119_110 Hb_004374_030--Hb_002119_110 Hb_002095_020 Hb_002095_020 Hb_004374_030--Hb_002095_020 Hb_000152_880 Hb_000152_880 Hb_000017_140--Hb_000152_880 Hb_007894_080 Hb_007894_080 Hb_000017_140--Hb_007894_080 Hb_007101_140 Hb_007101_140 Hb_000017_140--Hb_007101_140 Hb_010264_010 Hb_010264_010 Hb_000017_140--Hb_010264_010 Hb_000017_140--Hb_004466_090 Hb_000017_140--Hb_004804_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.074054 0.284887 0.887305 2.89817 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.697688 2.46791

CAGE analysis