Hb_002284_060

Information

Type -
Description -
Location Contig2284: 52248-60878
Sequence    

Annotation

kegg
ID rcu:RCOM_1601940
description sugar transporter, putative (EC:1.3.1.74)
nr
ID XP_002510716.1
description sugar transporter, putative [Ricinus communis]
swissprot
ID Q8LPQ8
description Monosaccharide-sensing protein 2 OS=Arabidopsis thaliana GN=MSSP2 PE=1 SV=2
trembl
ID B9R8S3
description Sugar transporter, putative OS=Ricinus communis GN=RCOM_1601940 PE=3 SV=1
Gene Ontology
ID GO:0016021
description monosaccharide-sensing protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23794: 51757-52159 , PASA_asmbl_23795: 52276-52710 , PASA_asmbl_23796: 52352-52634 , PASA_asmbl_23798: 54055-55866
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002284_060 0.0 - - sugar transporter, putative [Ricinus communis]
2 Hb_000103_300 0.0578768875 - - PREDICTED: perakine reductase-like [Jatropha curcas]
3 Hb_000152_570 0.0591001192 - - 21 kDa protein precursor, putative [Ricinus communis]
4 Hb_000193_070 0.0696458101 - - hypothetical protein JCGZ_25373 [Jatropha curcas]
5 Hb_004466_090 0.0875130305 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002391_240 0.0907609747 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003894_180 0.0924750155 - - PREDICTED: uncharacterized protein LOC104245193, partial [Nicotiana sylvestris]
8 Hb_004374_030 0.0979915893 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
9 Hb_001268_150 0.0981583778 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
10 Hb_001369_390 0.0996091452 - - Glycerol-3-phosphate transporter, putative [Ricinus communis]
11 Hb_113766_010 0.1028580628 - - plasma membrane H+ ATPase, partial [Nicotiana plumbaginifolia]
12 Hb_002095_020 0.1048876442 - - PREDICTED: glutamate receptor 3.4-like isoform X1 [Jatropha curcas]
13 Hb_016277_030 0.1051540597 - - hypothetical protein JCGZ_16973 [Jatropha curcas]
14 Hb_169077_030 0.1060397836 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein RF9 [Jatropha curcas]
15 Hb_002119_110 0.1076817827 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 28 [Jatropha curcas]
16 Hb_006154_010 0.1083356602 - - UDP-glucose 6-dehydrogenase, putative [Ricinus communis]
17 Hb_007370_010 0.1099088554 - - PREDICTED: indole-3-pyruvate monooxygenase YUCCA6 [Jatropha curcas]
18 Hb_000963_120 0.1100203589 - - PREDICTED: uncharacterized protein LOC105628103 isoform X1 [Jatropha curcas]
19 Hb_002518_230 0.1102886003 - - -
20 Hb_000784_060 0.1113637216 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002284_060 Hb_002284_060 Hb_000103_300 Hb_000103_300 Hb_002284_060--Hb_000103_300 Hb_000152_570 Hb_000152_570 Hb_002284_060--Hb_000152_570 Hb_000193_070 Hb_000193_070 Hb_002284_060--Hb_000193_070 Hb_004466_090 Hb_004466_090 Hb_002284_060--Hb_004466_090 Hb_002391_240 Hb_002391_240 Hb_002284_060--Hb_002391_240 Hb_003894_180 Hb_003894_180 Hb_002284_060--Hb_003894_180 Hb_000103_300--Hb_000152_570 Hb_000103_300--Hb_000193_070 Hb_000103_300--Hb_002391_240 Hb_006154_010 Hb_006154_010 Hb_000103_300--Hb_006154_010 Hb_169077_030 Hb_169077_030 Hb_000103_300--Hb_169077_030 Hb_000152_570--Hb_000193_070 Hb_000152_570--Hb_002391_240 Hb_000152_570--Hb_003894_180 Hb_007370_010 Hb_007370_010 Hb_000152_570--Hb_007370_010 Hb_000193_070--Hb_002391_240 Hb_000193_070--Hb_006154_010 Hb_000193_070--Hb_169077_030 Hb_004374_030 Hb_004374_030 Hb_004466_090--Hb_004374_030 Hb_016277_030 Hb_016277_030 Hb_004466_090--Hb_016277_030 Hb_000784_060 Hb_000784_060 Hb_004466_090--Hb_000784_060 Hb_002518_230 Hb_002518_230 Hb_004466_090--Hb_002518_230 Hb_004466_090--Hb_000152_570 Hb_004032_190 Hb_004032_190 Hb_004466_090--Hb_004032_190 Hb_113766_010 Hb_113766_010 Hb_002391_240--Hb_113766_010 Hb_002391_240--Hb_007370_010 Hb_003894_180--Hb_007370_010 Hb_003894_180--Hb_004466_090 Hb_003633_170 Hb_003633_170 Hb_003894_180--Hb_003633_170 Hb_003894_180--Hb_000103_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0295717 1.43796 2.37227 8.18787 0.0109359 0.0358372
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0383988 0.0604355 0 1.66885 5.59898

CAGE analysis