Hb_000152_570

Information

Type -
Description -
Location Contig152: 487870-488463
Sequence    

Annotation

kegg
ID rcu:RCOM_1500010
description 21 kDa protein precursor, putative
nr
ID XP_002510932.1
description 21 kDa protein precursor, putative [Ricinus communis]
swissprot
ID P17407
description 21 kDa protein OS=Daucus carota PE=2 SV=1
trembl
ID B9R9Q7
description 21 kDa protein, putative OS=Ricinus communis GN=RCOM_1500010 PE=4 SV=1
Gene Ontology
ID GO:0004857
description 21 kda

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13018: 487833-488576
cDNA
(Sanger)
(ID:Location)		 026_J04.ab1: 487836-488506 , 048_M10.ab1: 487836-488545

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000152_570 0.0 - - 21 kDa protein precursor, putative [Ricinus communis]
2 Hb_000103_300 0.0474551771 - - PREDICTED: perakine reductase-like [Jatropha curcas]
3 Hb_000193_070 0.0482430818 - - hypothetical protein JCGZ_25373 [Jatropha curcas]
4 Hb_002284_060 0.0591001192 - - sugar transporter, putative [Ricinus communis]
5 Hb_002391_240 0.06755893 - - conserved hypothetical protein [Ricinus communis]
6 Hb_003894_180 0.0729014038 - - PREDICTED: uncharacterized protein LOC104245193, partial [Nicotiana sylvestris]
7 Hb_007370_010 0.0731154502 - - PREDICTED: indole-3-pyruvate monooxygenase YUCCA6 [Jatropha curcas]
8 Hb_169077_030 0.0732493177 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein RF9 [Jatropha curcas]
9 Hb_004466_090 0.0831274642 - - conserved hypothetical protein [Ricinus communis]
10 Hb_006154_010 0.0918358873 - - UDP-glucose 6-dehydrogenase, putative [Ricinus communis]
11 Hb_012395_060 0.0928818958 - - PREDICTED: actin-related protein 2/3 complex subunit 2B [Jatropha curcas]
12 Hb_003376_140 0.0944705403 - - PREDICTED: L-type lectin-domain containing receptor kinase VIII.1 [Jatropha curcas]
13 Hb_002518_230 0.0997705352 - - -
14 Hb_141194_020 0.1009503451 - - carbohydrate transporter, putative [Ricinus communis]
15 Hb_113766_010 0.1016350218 - - plasma membrane H+ ATPase, partial [Nicotiana plumbaginifolia]
16 Hb_004374_030 0.1076708034 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
17 Hb_001079_050 0.1100698796 - - Calmodulin, putative [Ricinus communis]
18 Hb_000017_140 0.1131358435 - - polygalacturonase, putative [Ricinus communis]
19 Hb_001268_150 0.1150826414 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
20 Hb_003633_170 0.117657658 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000152_570 Hb_000152_570 Hb_000103_300 Hb_000103_300 Hb_000152_570--Hb_000103_300 Hb_000193_070 Hb_000193_070 Hb_000152_570--Hb_000193_070 Hb_002284_060 Hb_002284_060 Hb_000152_570--Hb_002284_060 Hb_002391_240 Hb_002391_240 Hb_000152_570--Hb_002391_240 Hb_003894_180 Hb_003894_180 Hb_000152_570--Hb_003894_180 Hb_007370_010 Hb_007370_010 Hb_000152_570--Hb_007370_010 Hb_000103_300--Hb_000193_070 Hb_000103_300--Hb_002284_060 Hb_000103_300--Hb_002391_240 Hb_006154_010 Hb_006154_010 Hb_000103_300--Hb_006154_010 Hb_169077_030 Hb_169077_030 Hb_000103_300--Hb_169077_030 Hb_000193_070--Hb_002391_240 Hb_000193_070--Hb_002284_060 Hb_000193_070--Hb_006154_010 Hb_000193_070--Hb_169077_030 Hb_004466_090 Hb_004466_090 Hb_002284_060--Hb_004466_090 Hb_002284_060--Hb_002391_240 Hb_002284_060--Hb_003894_180 Hb_113766_010 Hb_113766_010 Hb_002391_240--Hb_113766_010 Hb_002391_240--Hb_007370_010 Hb_003894_180--Hb_007370_010 Hb_003894_180--Hb_004466_090 Hb_003633_170 Hb_003633_170 Hb_003894_180--Hb_003633_170 Hb_003894_180--Hb_000103_300 Hb_007370_010--Hb_003633_170 Hb_007370_010--Hb_169077_030 Hb_031224_010 Hb_031224_010 Hb_007370_010--Hb_031224_010 Hb_007370_010--Hb_000103_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.65346 38.6742 81.0835 284.362 1.07486 0.975314
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.205001 0 0 63.6644 175.25

CAGE analysis