Hb_002119_110

Information

Type -
Description -
Location Contig2119: 167015-169875
Sequence    

Annotation

kegg
ID rcu:RCOM_1150010
description Xyloglucan endotransglucosylase/hydrolase protein 2 precursor, putative (EC:2.4.1.207)
nr
ID XP_012072371.1
description PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 28 [Jatropha curcas]
swissprot
ID Q38909
description Probable xyloglucan endotransglucosylase/hydrolase protein 28 OS=Arabidopsis thaliana GN=XTH28 PE=2 SV=1
trembl
ID A0A067KT85
description Xyloglucan endotransglucosylase/hydrolase OS=Jatropha curcas GN=JCGZ_04811 PE=3 SV=1
Gene Ontology
ID GO:0005618
description probable xyloglucan endotransglucosylase hydrolase protein 28

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21931: 167178-170066
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002119_110 0.0 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 28 [Jatropha curcas]
2 Hb_000963_120 0.053785768 - - PREDICTED: uncharacterized protein LOC105628103 isoform X1 [Jatropha curcas]
3 Hb_004374_030 0.0772621979 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
4 Hb_016277_030 0.0869132162 - - hypothetical protein JCGZ_16973 [Jatropha curcas]
5 Hb_000784_060 0.0972462851 - - conserved hypothetical protein [Ricinus communis]
6 Hb_004032_190 0.1000583539 - - PREDICTED: probable cellulose synthase A catalytic subunit 3 [UDP-forming] isoform X1 [Jatropha curcas]
7 Hb_012239_060 0.1026616716 - - PREDICTED: nudix hydrolase 18, mitochondrial [Jatropha curcas]
8 Hb_004466_090 0.1030796877 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001369_390 0.1036471991 - - Glycerol-3-phosphate transporter, putative [Ricinus communis]
10 Hb_002095_020 0.1058093475 - - PREDICTED: glutamate receptor 3.4-like isoform X1 [Jatropha curcas]
11 Hb_000309_070 0.1075593598 - - PREDICTED: 2-methylene-furan-3-one reductase [Cucumis melo]
12 Hb_002284_060 0.1076817827 - - sugar transporter, putative [Ricinus communis]
13 Hb_002518_230 0.1106872512 - - -
14 Hb_005183_100 0.1123146677 - - hypothetical protein CICLE_v10002898mg [Citrus clementina]
15 Hb_006920_020 0.1138612588 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
16 Hb_000005_010 0.1150002959 - - PREDICTED: serine carboxypeptidase-like 51 [Jatropha curcas]
17 Hb_006992_010 0.1191316239 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
18 Hb_000000_290 0.121310044 - - PREDICTED: probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 4 [Jatropha curcas]
19 Hb_001296_060 0.1230593489 - - Leucoanthocyanidin dioxygenase, putative [Ricinus communis]
20 Hb_000193_070 0.1233706732 - - hypothetical protein JCGZ_25373 [Jatropha curcas]

Gene co-expression network

sample Hb_002119_110 Hb_002119_110 Hb_000963_120 Hb_000963_120 Hb_002119_110--Hb_000963_120 Hb_004374_030 Hb_004374_030 Hb_002119_110--Hb_004374_030 Hb_016277_030 Hb_016277_030 Hb_002119_110--Hb_016277_030 Hb_000784_060 Hb_000784_060 Hb_002119_110--Hb_000784_060 Hb_004032_190 Hb_004032_190 Hb_002119_110--Hb_004032_190 Hb_012239_060 Hb_012239_060 Hb_002119_110--Hb_012239_060 Hb_000963_120--Hb_004374_030 Hb_000963_120--Hb_016277_030 Hb_006916_140 Hb_006916_140 Hb_000963_120--Hb_006916_140 Hb_000309_070 Hb_000309_070 Hb_000963_120--Hb_000309_070 Hb_000963_120--Hb_012239_060 Hb_004374_030--Hb_016277_030 Hb_004466_090 Hb_004466_090 Hb_004374_030--Hb_004466_090 Hb_004374_030--Hb_000784_060 Hb_002095_020 Hb_002095_020 Hb_004374_030--Hb_002095_020 Hb_016277_030--Hb_004466_090 Hb_005183_100 Hb_005183_100 Hb_016277_030--Hb_005183_100 Hb_001206_100 Hb_001206_100 Hb_016277_030--Hb_001206_100 Hb_016277_030--Hb_004032_190 Hb_016277_030--Hb_000784_060 Hb_000665_210 Hb_000665_210 Hb_000784_060--Hb_000665_210 Hb_000784_060--Hb_004466_090 Hb_009421_070 Hb_009421_070 Hb_000784_060--Hb_009421_070 Hb_001369_390 Hb_001369_390 Hb_000784_060--Hb_001369_390 Hb_000364_090 Hb_000364_090 Hb_004032_190--Hb_000364_090 Hb_004032_190--Hb_001206_100 Hb_004032_190--Hb_009421_070 Hb_004032_190--Hb_004466_090 Hb_004032_190--Hb_000784_060 Hb_012239_060--Hb_016277_030 Hb_003097_220 Hb_003097_220 Hb_012239_060--Hb_003097_220 Hb_012239_060--Hb_005183_100 Hb_005057_030 Hb_005057_030 Hb_012239_060--Hb_005057_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.2724 31.0963 44.7468 166.144 0.554055 2.10354
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.590208 0.154774 0.580611 31.2482 177.872

CAGE analysis