Hb_003097_220

Information

Type -
Description -
Location Contig3097: 152875-155886
Sequence    

Annotation

kegg
ID pop:POPTR_0001s06150g
description hypothetical protein
nr
ID XP_006368595.1
description hypothetical protein POPTR_0001s06150g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5GSP0
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s06150g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32749: 153327-154177 , PASA_asmbl_32750: 154294-154718
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003097_220 0.0 - - hypothetical protein POPTR_0001s06150g [Populus trichocarpa]
2 Hb_006355_060 0.0836400242 - - PREDICTED: transcription factor PIF1-like isoform X2 [Jatropha curcas]
3 Hb_002613_040 0.107753509 - - phosphate translocator-related family protein [Populus trichocarpa]
4 Hb_114917_010 0.1116141071 - - PREDICTED: thylakoid lumenal 19 kDa protein, chloroplastic [Jatropha curcas]
5 Hb_012239_060 0.1157439283 - - PREDICTED: nudix hydrolase 18, mitochondrial [Jatropha curcas]
6 Hb_005057_030 0.116428858 - - Leucoanthocyanidin dioxygenase, putative [Ricinus communis]
7 Hb_005725_160 0.1185627855 - - PREDICTED: uncharacterized protein LOC105630811 [Jatropha curcas]
8 Hb_002713_060 0.1202942952 - - PREDICTED: protein NRT1/ PTR FAMILY 6.4 [Jatropha curcas]
9 Hb_000392_210 0.1250627737 transcription factor TF Family: TCP hypothetical protein POPTR_0004s04600g [Populus trichocarpa]
10 Hb_031862_120 0.1259199461 - - PREDICTED: root phototropism protein 3 [Jatropha curcas]
11 Hb_000347_320 0.1279015332 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
12 Hb_005723_090 0.1292205612 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001369_390 0.1296614839 - - Glycerol-3-phosphate transporter, putative [Ricinus communis]
14 Hb_002119_110 0.1314378878 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 28 [Jatropha curcas]
15 Hb_020378_020 0.131760316 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
16 Hb_002095_020 0.1322046262 - - PREDICTED: glutamate receptor 3.4-like isoform X1 [Jatropha curcas]
17 Hb_003147_040 0.1322607576 - - PREDICTED: probable calcium-binding protein CML18 [Jatropha curcas]
18 Hb_020141_030 0.1351682414 - - solanesyl diphosphate synthase, putative [Ricinus communis]
19 Hb_010222_060 0.1367548534 - - PREDICTED: acyltransferase-like protein At1g54570, chloroplastic isoform X1 [Jatropha curcas]
20 Hb_002636_070 0.136962032 - - PREDICTED: putative U-box domain-containing protein 42 [Jatropha curcas]

Gene co-expression network

sample Hb_003097_220 Hb_003097_220 Hb_006355_060 Hb_006355_060 Hb_003097_220--Hb_006355_060 Hb_002613_040 Hb_002613_040 Hb_003097_220--Hb_002613_040 Hb_114917_010 Hb_114917_010 Hb_003097_220--Hb_114917_010 Hb_012239_060 Hb_012239_060 Hb_003097_220--Hb_012239_060 Hb_005057_030 Hb_005057_030 Hb_003097_220--Hb_005057_030 Hb_005725_160 Hb_005725_160 Hb_003097_220--Hb_005725_160 Hb_006355_060--Hb_002613_040 Hb_003147_040 Hb_003147_040 Hb_006355_060--Hb_003147_040 Hb_001232_040 Hb_001232_040 Hb_006355_060--Hb_001232_040 Hb_163950_050 Hb_163950_050 Hb_006355_060--Hb_163950_050 Hb_058471_010 Hb_058471_010 Hb_006355_060--Hb_058471_010 Hb_000103_130 Hb_000103_130 Hb_002613_040--Hb_000103_130 Hb_002613_040--Hb_163950_050 Hb_002613_040--Hb_114917_010 Hb_006750_010 Hb_006750_010 Hb_002613_040--Hb_006750_010 Hb_003058_170 Hb_003058_170 Hb_114917_010--Hb_003058_170 Hb_020378_020 Hb_020378_020 Hb_114917_010--Hb_020378_020 Hb_028396_020 Hb_028396_020 Hb_114917_010--Hb_028396_020 Hb_001916_150 Hb_001916_150 Hb_114917_010--Hb_001916_150 Hb_000963_120 Hb_000963_120 Hb_012239_060--Hb_000963_120 Hb_002119_110 Hb_002119_110 Hb_012239_060--Hb_002119_110 Hb_016277_030 Hb_016277_030 Hb_012239_060--Hb_016277_030 Hb_005183_100 Hb_005183_100 Hb_012239_060--Hb_005183_100 Hb_012239_060--Hb_005057_030 Hb_005723_090 Hb_005723_090 Hb_005057_030--Hb_005723_090 Hb_125961_010 Hb_125961_010 Hb_005057_030--Hb_125961_010 Hb_000120_480 Hb_000120_480 Hb_005057_030--Hb_000120_480 Hb_005057_030--Hb_005183_100 Hb_002713_060 Hb_002713_060 Hb_005057_030--Hb_002713_060 Hb_003226_230 Hb_003226_230 Hb_005057_030--Hb_003226_230 Hb_001950_100 Hb_001950_100 Hb_005725_160--Hb_001950_100 Hb_005725_160--Hb_001232_040 Hb_009222_080 Hb_009222_080 Hb_005725_160--Hb_009222_080 Hb_000622_030 Hb_000622_030 Hb_005725_160--Hb_000622_030 Hb_002168_070 Hb_002168_070 Hb_005725_160--Hb_002168_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.211215 2.97422 2.60698 6.57516 0.0485528 0.0465832
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.216821 0.0454992 0.174083 1.182 8.98018

CAGE analysis